Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M05
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.0
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 4.0
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 29 4.0
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 29 4.0
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 9.3
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 168 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 299
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 168 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 299
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 13 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 153
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 552 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 433
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 552 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 433
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 655 FARLERNTXAPADIIDRAXLPPNRVSNETMKVVXFQRRSRETISHLCYTSHVSLQCQTRV 476
+ R++RN PA D+ NR ET+ + R ++ I CY L C+T +
Sbjct: 751 YERVKRNESVPAQSGDQVLEEANRQMKETLTCPSCKTRPKDCIMLKCY----HLFCETCI 806
Query: 475 K 473
K
Sbjct: 807 K 807
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 655 FARLERNTXAPADIIDRAXLPPNRVSNETMKVVXFQRRSRETISHLCYTSHVSLQCQTRV 476
+ R++RN PA D+ NR ET+ + R ++ I CY L C+T +
Sbjct: 754 YERVKRNESVPAQSGDQVLEEANRQMKETLTCPSCKTRPKDCIMLKCY----HLFCETCI 809
Query: 475 K 473
K
Sbjct: 810 K 810
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 549 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 433
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 679 RXFPPXHHFARLERNTXAPADIIDRAXLPPNRVSNETMKVVXFQRRSRETISHLCYTSHV 500
R F HH A + +I R PP R++ ++ + R SHLC+T H
Sbjct: 572 RKFATRHH-AMMMAQQQTNRVLICRQCKPPQRLTT-ARQIKEHRARHLPRKSHLCWTCHK 629
Query: 499 SLQCQTRVKLN 467
S + + L+
Sbjct: 630 SFRTAQLLSLH 640
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,542,883
Number of Sequences: 27780
Number of extensions: 354556
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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