Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_M04
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   239   2e-63
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   236   2e-62
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    29   3.5  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    29   4.6  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   6.0  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.0  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  239 bits (585), Expect = 2e-63
 Identities = 111/199 (55%), Positives = 140/199 (70%)
 Frame = +3

Query: 57  ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 236
           ++A   G    L+  E+DV  MLAA  HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 237 EXXXXXXXXXXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 416
           +          IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 417 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 596
            EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180

Query: 597 LLAREVLXLRGVLPRDQRW 653
           LLAR VL +RG +    +W
Sbjct: 181 LLARMVLQMRGTILPGHKW 199


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  236 bits (577), Expect = 2e-62
 Identities = 108/188 (57%), Positives = 134/188 (71%)
 Frame = +3

Query: 90  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEEXXXXXXXXXX 269
           L+  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWE+          
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 270 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 449
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 450 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRG 629
             DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL +RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191

Query: 630 VLPRDQRW 653
            +    +W
Sbjct: 192 TILPGHKW 199


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 339 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVLPRYDAS*SHGYHQHVVC 184
           + SV + D+  ++  RT  RGS  L    QPE  LPRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEP-LPRYNKHWRRKAHSMCVC 319


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 3   LEVHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 179
           L V F ++W   +    +   T + G   L   +ED+ K L+A  H   E +   MET+
Sbjct: 238 LGVPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 157  TFSAPRWVVAASILVTSSSLRASTSNP 77
            TF A RWV+AA   V  + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 335 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 442
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,965,346
Number of Sequences: 37544
Number of extensions: 505708
Number of successful extensions: 1087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)