Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_M03
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    29   0.61 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.5  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    27   4.3  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.7  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 335 RWSRASDRLTSFTVRNVINTGITGSWLSWS 424
           R + ASD LT    +N+ N   TGSWL WS
Sbjct: 138 RSTTASDILTKLGYKNIGN--YTGSWLEWS 165


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 583 LSTPVSERFVVSVPEARLWTLTPYKKSGSILPSKISCTKWLARTQLSEV 437
           ++TP+ E   ++ P     T+TP  ++ +ILP     T  +  T +  V
Sbjct: 56  MTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETTTIPTV 104


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 652 LAQXSXGKGVNQARLFLSPXLAPWASL 732
           + Q   G G+    + +SP LA WA+L
Sbjct: 54  ITQSVKGNGIGPFEILISPLLAKWANL 80


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 451 ECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQIVPI 570
           +C+  T+   S  G W LT+      IIG   P   ++P+
Sbjct: 381 DCLDRTNVVQSCIGRWVLTNQLRKCGIIGATHPLRSVIPL 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,092
Number of Sequences: 5004
Number of extensions: 66752
Number of successful extensions: 226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)