Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M02
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.049
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.46
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.51
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.61
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 5.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.5
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.049
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 728 PXXRAPPPPPPXXXXPPPPXXXPXXPXXP 814
P AP PPPP PPPP P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Frame = +3
Query: 741 PPPPP---PXXPXXPPXPXXPXXSP 806
PPPPP P P PP P P +P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 728 PXXRAPPPPPPXXXXPPPPXXXPXXPXXP 814
P APP P PPPP P P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.46
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 737 RAPPPPPPXXXXP-PPPXXXPXXPXXP 814
++PPPPPP P P P P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 743 PPPPPPXXXXPPPPXXXPXXP 805
PPPPPP PP P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Frame = +2
Query: 728 PXXRAPPPPPP----XXXXPPPPXXXP 796
P PPPPPP PPPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/58 (24%), Positives = 18/58 (31%)
Frame = +2
Query: 338 KKKKKXXFFXPPPPPXKXKXPPXXLXXXKXXXXXPXXXXXXXPPPXXXXXXXXXPPXP 511
++++K PPPPP P P PPP PP P
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 746 PPPPPXXXXPPPPXXXP 796
PPP P PPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 741 PPPPPPXXPXXPPXPXXP 794
PPPPPP P P P
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 0.51
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 747 PPPPXXPXXPPXP 785
PPPP P PP P
Sbjct: 273 PPPPATPSQPPRP 285
Score = 23.4 bits (48), Expect(2) = 0.51
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 729 LXXAPPPPPPXXP 767
L PPPPPP P
Sbjct: 235 LPAPPPPPPPTLP 247
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.61
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 728 PXXRAPPPPPPXXXXPPPPXXXPXXP 805
P PPPPPP PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.9
Identities = 39/183 (21%), Positives = 42/183 (22%), Gaps = 7/183 (3%)
Frame = +3
Query: 279 PPPPGGVFXXXGGXPXXFSKKKKKXXXFXXPPPPXKKXKXPXXXXXXXXXXXXXPXPXXX 458
PPPP G P + PPPP + P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSS--LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 459 XP-----PPPXGXXXXXXXPPXXXXXXXXX--PPXXXXXXXXRGXXPXPXXPPPXPXFXL 617
P PPP PP P R P PP P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 618 XXLXXXPXXPPXXXPXXXXXPXXXXXXXXXXXXXXXXLXXAPPPPPPXXPXXPPXPXXPX 797
L P PP P A PP PP P PP P
Sbjct: 429 PSLP--PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM--PAAPPLPPAAPAPPPAPAPAP 484
Query: 798 XSP 806
+P
Sbjct: 485 AAP 487
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 740 APPPPPPXXXXPPPPXXXPXXPXXP 814
APP PP PP P P P P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLP 470
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -1
Query: 813 GXXGXXGXXXG-GGGXXXXGGGGGGARXXG 727
G G G G GG GGG GGAR G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 728 PXXRAPPPPPPXXXXPPPPXXXPXXPXXP 814
P APP P P PP P P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = +2
Query: 728 PXXRAPPPPPPXXXXP--PPPXXXPXXP 805
P APP P P P PPP P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 728 PXXRAPPPPPPXXXXPPPPXXXPXXPXXP 814
P APP P P PP P P P
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = -3
Query: 67 FSDDRAKRS---PTYATPLMSPYT 5
+ DDR + S PT+ PL+ PYT
Sbjct: 51 YYDDRTRASGPYPTFTKPLIDPYT 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,718
Number of Sequences: 5004
Number of extensions: 28757
Number of successful extensions: 337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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