Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_M02
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   0.55 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.85 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect(2) = 0.55
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 742  PPPPPPXXPG 771
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 21.4 bits (43), Expect(2) = 0.55
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 739  RPPPPPP 759
            +PPPPPP
Sbjct: 1354 QPPPPPP 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 728 PXXRAPPPPPPXXXXP 775
           P   APPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 721  PXXXXXRPPPPPP 759
            P      PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,661
Number of Sequences: 438
Number of extensions: 8113
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)