Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L23
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   7.2  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   7.2  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   7.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.2  

>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 9   FTRDSFNRSVVIKCRRLILFSLPVSPHLCYS 101
           F RD FN    I C  L+ FS  +  + C++
Sbjct: 412 FLRDQFNFITSIACLSLLCFSASLMANSCFT 442


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 167 YVARSESIMRDSDVAFSHXAALAIAQVRRNG*R 69
           Y    ES + D+ +  SH  A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 19  IASIDQLS*NVDDLYYSRYPFLLTCAIASAAXCENATSL 135
           +ASI  LS +   L Y+ Y  LL  + A  + C+N  +L
Sbjct: 83  VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 683 PPPXXXGXGPPXPXXP 636
           PPP   G GPP P  P
Sbjct: 766 PPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,433
Number of Sequences: 5004
Number of extensions: 27749
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)