Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L23
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.24
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.24
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.24
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 32 0.42
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 32 0.42
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 30 1.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 1.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 6.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 6.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 739 GGPXPXXGPGXXPXDXXGPPPRXPXGXARP 650
GGP P PG P GPPP P G P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPP 753
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 652 GGPXPXXXGGGVPAXPXGXXXGRXXGXAPRXFXPFPXPXXXPRGXPP 792
GGP P GG+P G G P P P P G PP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 739 GGPXPXXGPGXXPXDXXGPPPRXP 668
GGP P PG P GPPP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 739 GGPXPXXGPGXXPXDXXGPPPRXPXGXARP 650
GGP P PG P GPPP P G P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPP 753
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 652 GGPXPXXXGGGVPAXPXGXXXGRXXGXAPRXFXPFPXPXXXPRGXPP 792
GGP P GG+P G G P P P P G PP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 739 GGPXPXXGPGXXPXDXXGPPPRXP 668
GGP P PG P GPPP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 739 GGPXPXXGPGXXPXDXXGPPPRXPXGXARP 650
GGP P PG P GPPP P G P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPP 336
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 652 GGPXPXXXGGGVPAXPXGXXXGRXXGXAPRXFXPFPXPXXXPRGXPP 792
GGP P GG+P G G P P P P G PP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 739 GGPXPXXGPGXXPXDXXGPPPRXP 668
GGP P PG P GPPP P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPP 346
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/48 (41%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 652 GGPXPXXXGGGVPAXPXGXXXGRXXG-XAPRXFXPFPXPXXXPRGXPP 792
GGP GGG P P G G G AP P P PRG PP
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAP------PKPPAKPRGRPP 657
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/48 (41%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 652 GGPXPXXXGGGVPAXPXGXXXGRXXG-XAPRXFXPFPXPXXXPRGXPP 792
GGP GGG P P G G G AP P P PRG PP
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAP------PKPPAKPRGRPP 657
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = -3
Query: 791 GGXPRGXXXGXG--KGXKXRGAXPXXRPXXXPXGXAGTPPPXXXGXGPPXPXXPXXXG 624
GG PRG G G G G P P G G P GP P P G
Sbjct: 161 GGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 218
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = -3
Query: 791 GGXPRGXXXGXG--KGXKXRGAXPXXRPXXXPXGXAGTPPPXXXGXGPPXPXXPXXXG 624
GG PRG G G G G P P G G P GP P P G
Sbjct: 441 GGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 498
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 737 GAXPXXRPXXXPXGXAGTPPPXXXGXGPPXP 645
G+ P R P G+PPP G PP P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 737 GAXPXXRPXXXPXGXAGTPPPXXXGXGPPXP 645
G+ P R P G+PPP G PP P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 737 GAXPXXRPXXXPXGXAGTPPPXXXGXGPPXP 645
G+ P R P G+PPP G PP P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 610 FXXPXPXXSGXXGXGGPXPXXXGGGVPAXPXGXXXGRXXGXAPRXFXPFPXPXXXPRGXP 789
+ P P G G GP GG P P G G P F P P G P
Sbjct: 409 YGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPG---AYGPPPTGFPPVGAPPPGAAGAP 465
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = -3
Query: 806 EXRXRGGXPRGXXXGXGKGXKXRGAXPXXRPXXXPXGXAGTPPPXXXGXGPPXPXXPXXX 627
E RGG P G + RG P R P G PPP G GPP P
Sbjct: 1444 EGSWRGGPPMRGMPPLGM-MRGRGGPPPPRGMNSPM--RGMPPPMR-GGGPPMRGGPPMR 1499
Query: 626 G 624
G
Sbjct: 1500 G 1500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,090
Number of Sequences: 27780
Number of extensions: 249491
Number of successful extensions: 1214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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