Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L22
         (1006 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protei...    30   3.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   9.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   9.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   9.1  

>U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protein 73
            protein.
          Length = 285

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 25/98 (25%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
 Frame = -3

Query: 1004 GGXGKLPGXXQXGTPXGKXLNPRXRXPXXPXXGXPPGXXXXXXPXXPPGRXXGKXXXXXL 825
            G  G      Q G P  +  N R   P  P    PPG          PG   G+      
Sbjct: 150  GNPGPKGPPGQPGAPGEQGPNGRPGAPGAPGPQGPPGTAGNDGTPGQPG-APGQVRTVPA 208

Query: 824  XXXXXXXXGXXGXLXGPG--XXPQKTXXXNPPXPPGXP 717
                    G  G    PG    P  +    PP P G P
Sbjct: 209  PPGNPGQPGEPGAQGPPGEDGRPGNSGPQGPPGPQGEP 246


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/88 (23%), Positives = 23/88 (26%)
 Frame = -1

Query: 778 APGXXPKKPXXXTPPXPRGXPPXXXXXSXXKXXGXGXXXPXPXXXXGXXLFFFXKXXGGG 599
           A G  P       PP P G PP             G   P P                GG
Sbjct: 260 AAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 319

Query: 598 GXRXPPXXXGGXPRXXVXKKKKKXGXPP 515
               PP   G  P     K++     PP
Sbjct: 320 S--PPPAGTGSPPPPPRQKRQAPERSPP 345


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/88 (23%), Positives = 23/88 (26%)
 Frame = -1

Query: 778 APGXXPKKPXXXTPPXPRGXPPXXXXXSXXKXXGXGXXXPXPXXXXGXXLFFFXKXXGGG 599
           A G  P       PP P G PP             G   P P                GG
Sbjct: 281 AAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 340

Query: 598 GXRXPPXXXGGXPRXXVXKKKKKXGXPP 515
               PP   G  P     K++     PP
Sbjct: 341 S--PPPAGTGSPPPPPRQKRQAPERSPP 366


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/88 (23%), Positives = 23/88 (26%)
 Frame = -1

Query: 778 APGXXPKKPXXXTPPXPRGXPPXXXXXSXXKXXGXGXXXPXPXXXXGXXLFFFXKXXGGG 599
           A G  P       PP P G PP             G   P P                GG
Sbjct: 266 AAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 325

Query: 598 GXRXPPXXXGGXPRXXVXKKKKKXGXPP 515
               PP   G  P     K++     PP
Sbjct: 326 S--PPPAGTGSPPPPPRQKRQAPERSPP 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,736
Number of Sequences: 27780
Number of extensions: 284395
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)