Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L22
         (1006 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   5.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -3

Query: 926 PXXPXXGXPPGXXXXXXPXXPPG 858
           P  P  G PP       P  PPG
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -3

Query: 800 GXXGXLXGPGXXPQKTXXXNPPXPPGXPP 714
           G  G    P   PQ     +PP P   PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 778 APGXXPKKPXXXTPPXPRGXPP 713
           +P   P+ P   +PP P   PP
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPP 47


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  YLIPGLPGFLPSTWXPIN 151
           +L+P L GF  ++W  IN
Sbjct: 298 FLVPMLQGFPSNSWVAIN 315


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  YLIPGLPGFLPSTWXPIN 151
           +L+P L GF  ++W  IN
Sbjct: 266 FLVPMLQGFPSNSWVAIN 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,474
Number of Sequences: 438
Number of extensions: 4352
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)