Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L21
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.93 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   3.8  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   6.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -2

Query: 449 PPPPXXGGEXPXXXAPPPPPXGXKK 375
           PPPP  G E P    PPPPP   KK
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 32.7 bits (71), Expect = 0.057
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 449 PPPPXXGGEXPXXXAPPPPPXGXKK 375
           PPPP   G  P    PPPPP G  K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 484 PPXGXXPPPPPPXYXXKXPP 543
           PP    PPPPPP +     P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP 24



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 487 PXGXXPPPPPPXYXXK 534
           P    PPPPPP Y  K
Sbjct: 20  PPSQPPPPPPPGYVKK 35



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 405 PPPPPPGXKKXXXVGPXP 352
           PPPPPPG +      P P
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 449 PPPPXXGGEXPXXXAPPPP 393
           PPPP   G  P    PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 402 PPPPPGXKKXXXVGPXPXXKKPXFFXGGG 316
           PPPPP        GP P    P     GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 493 GXXPPPPPPXYXXKXPP 543
           G  PPPPPP      PP
Sbjct: 760 GPPPPPPPPGVAGAGPP 776


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 462 KKXXAXPXXGGGRTTXXXXPPPPPP 388
           ++    P  G G +     PPPPPP
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +3

Query: 15  WKSXSTGWPTGC-TGYQFTPGXLNK 86
           WK+ S  W  GC   Y+F P  L K
Sbjct: 164 WKNPSKKWKVGCKLAYEFFPKDLRK 188


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 405 PPPPPPGXKKXXXVGPXPXXKKPXFFXGGGGXPP 304
           PPP  P  K      P P   +  F  GG G PP
Sbjct: 363 PPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPP 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,250
Number of Sequences: 5004
Number of extensions: 25596
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)