Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L19
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0384 - 2781362-2782299,2782320-2782428 31 1.1
11_06_0144 - 20608382-20610277 29 3.3
11_08_0083 + 28256844-28258760 29 4.4
04_04_0387 + 24869594-24871480 29 4.4
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662... 29 5.8
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 29 5.8
03_05_0312 - 23019662-23020093 29 5.8
10_01_0284 + 2969965-2970136,2970240-2970703 28 7.7
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 7.7
03_05_0268 + 22540149-22540204,22541370-22541751 28 7.7
02_05_0509 - 29630224-29630328,29630408-29630500,29630669-296307... 28 7.7
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 4 WFPGEVAPP---WTRSCASATSPIVRAPRGACCWLCRLISPTPSTR 132
W P +PP W ++A SP++R P + L SP PS R
Sbjct: 287 WSPISSSPPARLWASQPSAAPSPVIRTPSASWSSAICLPSPQPSAR 332
>11_06_0144 - 20608382-20610277
Length = 631
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 679 PAXLGINSPXWWSKRPXTVQQQXPKYLSFGWTSDRYSADYEIRSRRRS 536
P+ W++KR V ++ +YL W + Y +SRRRS
Sbjct: 501 PSLQSFMGAYWYAKRKQRVDRRIKEYLDLSWGNVVSCLGYAGQSRRRS 548
>11_08_0083 + 28256844-28258760
Length = 638
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 591 AGPVIDTPPTMRFAPGGGPLRTG*KHT-ASDLRRATSR 481
A PV+D PT F P GG +H DL TSR
Sbjct: 156 AEPVLDIQPTFTFGPSGGGRGRKNRHAEEDDLETETSR 193
>04_04_0387 + 24869594-24871480
Length = 628
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 152 HDRAPRDRVEGVGDINRHSQQHAPLGARTIGEVA 51
H + R+EG GD+ R ++ A + +R +GE A
Sbjct: 106 HRKPSGGRIEGGGDVRREAKSRARIRSRRLGENA 139
>11_06_0027 +
19363678-19363698,19364442-19364484,19366240-19366276,
19366359-19366602,19366749-19366765,19366901-19366986,
19367347-19367378,19367455-19367615,19367722-19367818,
19367894-19368085,19368172-19368233,19368302-19368448,
19368776-19369589
Length = 650
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 284 RGSVLGPLLWDIGFDWVLRGAGLRGVDV 367
RGS++GP+L+ +G D V+ A LR V +
Sbjct: 539 RGSIIGPVLFKVGED-VMIDASLRAVQI 565
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/53 (26%), Positives = 19/53 (35%)
Frame = -2
Query: 691 PXHPPAXLGINSPXWWSKRPXTVQQQXPKYLSFGWTSDRYSADYEIRSRRRSP 533
P PP + P W P T Q + GW SD E +++ P
Sbjct: 54 PSSPPPRIDQIEPSGWESDPATAHPQHLPFEPSGWDSDPPQLPPEQEQQKQKP 106
>03_05_0312 - 23019662-23020093
Length = 143
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -2
Query: 370 HYVD-----ATQASTAQDPVETDVPQEWS-QYRPPAGPRTTPLSVPTPSSRGRLH 224
H+VD T A+ QD E+D+P+E+ PP P PLS P+ G ++
Sbjct: 13 HFVDPTHNPTTDATLQQDEHESDLPEEFGVTSPPPLSPPPYPLS-PSMEDDGMIY 66
>10_01_0284 + 2969965-2970136,2970240-2970703
Length = 211
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 295 YRPPAGPRTTPLSVPTPSSRG 233
++ P GP+ TPL PTP++ G
Sbjct: 168 HKRPQGPKPTPLPKPTPANGG 188
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 149 DRAPRDRVEGVGDINRHSQQHAPLGARTIGEVADAQDRVHGGAT 18
D P D + VG + H H L E A+ + R +GGAT
Sbjct: 143 DFLPADEIRRVGGGHHHHHHHPQLQQLLPWEEAEEERRRYGGAT 186
>03_05_0268 + 22540149-22540204,22541370-22541751
Length = 145
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 319 RFRLGPARCWPAWRR 363
RF GP + WP WRR
Sbjct: 15 RFPWGPTKIWPTWRR 29
>02_05_0509 -
29630224-29630328,29630408-29630500,29630669-29630719,
29630864-29630930,29631181-29631227,29631300-29631350,
29631433-29631552,29632777-29632869,29633440-29633485,
29633577-29633629,29633800-29633839,29633938-29634623
Length = 483
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 307 EWSQYRPPAGPRTTPLS-VPTPSSRGRLHFGPER*SSIRVRRLGGTR 170
E+ +Y+ G PLS +P P GR G + SS RVRR R
Sbjct: 279 EYEKYKVRTGQLQVPLSALPQPGGTGR-EIGMNQSSSARVRRDSAAR 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,879,363
Number of Sequences: 37544
Number of extensions: 573630
Number of successful extensions: 2063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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