Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L19
(815 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-... 32 2.2
BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-... 32 2.2
BC126912-1|AAI26913.1| 1132|Homo sapiens CROCC protein protein. 32 2.2
BC126911-1|AAI26912.1| 1132|Homo sapiens CROCC protein protein. 32 2.2
AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-... 32 2.2
AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-... 32 2.2
AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein. 32 2.2
X94553-1|CAA64246.1| 500|Homo sapiens fork head like protein pr... 31 3.8
AK127130-1|BAC86842.1| 266|Homo sapiens protein ( Homo sapiens ... 31 3.8
BC035967-1|AAH35967.2| 397|Homo sapiens RG9MTD1 protein protein. 31 6.6
AY561707-1|AAS66980.1| 397|Homo sapiens HBV pre-S2 trans-regula... 31 6.6
AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens ... 31 6.6
AF226052-1|AAF86952.1| 403|Homo sapiens HNYA protein. 31 6.6
>BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet
coiled-coil, rootletin protein.
Length = 1898
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 334 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 393
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 394 PACSDSSTLALIHSALHK 411
>BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet
coiled-coil, rootletin protein.
Length = 2017
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 453 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 512
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 513 PACSDSSTLALIHSALHK 530
>BC126912-1|AAI26913.1| 1132|Homo sapiens CROCC protein protein.
Length = 1132
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 316 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 375
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 376 PACSDSSTLALIHSALHK 393
>BC126911-1|AAI26912.1| 1132|Homo sapiens CROCC protein protein.
Length = 1132
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 316 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 375
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 376 PACSDSSTLALIHSALHK 393
>AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet
coiled-coil, rootletin protein.
Length = 1898
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 334 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 393
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 394 PACSDSSTLALIHSALHK 411
>AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet
coiled-coil, rootletin protein.
Length = 2017
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 453 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 512
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 513 PACSDSSTLALIHSALHK 530
>AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein.
Length = 1919
Score = 32.3 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -1
Query: 572 LRRL*DSLPEEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRGPS 393
LR L ++ + SG+ S RT L R PP R S RGPS
Sbjct: 355 LRDLAQAVLSDSESGVQLSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPS 414
Query: 392 PACRRHSTLRRRHAGQHR 339
PAC STL H+ H+
Sbjct: 415 PACSDSSTLALIHSALHK 432
>X94553-1|CAA64246.1| 500|Homo sapiens fork head like protein
protein.
Length = 500
Score = 31.5 bits (68), Expect = 3.8
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -2
Query: 694 GPXHPPAXLGINSPXWWSKRPXTVQQQXPKYLSFGWTSDRYSADYEIRSRRRSPPDWVKA 515
GP PP +GI SP W R TV++ + R A + R+ P +++
Sbjct: 149 GPPPPPDSVGIQSPGVWDARAMTVERAVVAKPEVWYREGRAGAPAP-PAARKPPYSYIRR 207
Query: 514 HRFGLAEGHL 485
H + L
Sbjct: 208 HAMAIGSPRL 217
>AK127130-1|BAC86842.1| 266|Homo sapiens protein ( Homo sapiens
cDNA FLJ45187 fis, clone BRAWH3048548. ).
Length = 266
Score = 31.5 bits (68), Expect = 3.8
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 452 WRPPPSQGSLRLCSRLRGPSPACRRHSTLRRRHAGQHRAGPSRN 321
W PPP Q + L SR+ P R S RR +G RAGP ++
Sbjct: 209 WPPPPLQPN-PLLSRMPADFPTSRVVSKRSRRRSGICRAGPPKH 251
>BC035967-1|AAH35967.2| 397|Homo sapiens RG9MTD1 protein protein.
Length = 397
Score = 30.7 bits (66), Expect = 6.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 163 RSDSTIVLQGIVLKALAISIDTANNTPPSEHARSERWRTRKTASMVE 23
R++ TI+ + + K A++ +TPPSE ++W+T +S+ E
Sbjct: 24 RNNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE 70
>AY561707-1|AAS66980.1| 397|Homo sapiens HBV pre-S2 trans-regulated
protein 2 protein.
Length = 397
Score = 30.7 bits (66), Expect = 6.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 163 RSDSTIVLQGIVLKALAISIDTANNTPPSEHARSERWRTRKTASMVE 23
R++ TI+ + + K A++ +TPPSE ++W+T +S+ E
Sbjct: 24 RNNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE 70
>AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ35392 fis, clone SKNSH2000716. ).
Length = 149
Score = 30.7 bits (66), Expect = 6.6
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 545 EEVPSGLGESTPLRTCGGPPQDLISECD*RRWRPPPSQGSLRLCSRLRG-PSPACRR 378
E VP LG ++P + G P + R + P+ G L LCSRLR P C R
Sbjct: 57 EPVPCALGNNSPRQHFGIPGYPEAA----RDFSSSPAPGLLTLCSRLRAKPDSVCLR 109
>AF226052-1|AAF86952.1| 403|Homo sapiens HNYA protein.
Length = 403
Score = 30.7 bits (66), Expect = 6.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 163 RSDSTIVLQGIVLKALAISIDTANNTPPSEHARSERWRTRKTASMVE 23
R++ TI+ + + K A++ +TPPSE ++W+T +S+ E
Sbjct: 30 RNNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQE 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,874,416
Number of Sequences: 237096
Number of extensions: 2977622
Number of successful extensions: 13388
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13388
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -