Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L17
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    30   2.4  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   4.1  
07_03_1136 + 24218601-24218734,24218769-24219906                       28   9.5  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   9.5  

>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = +2

Query: 398 GXGKXXLGGXXXPPXXNXG--PXKXXKGXGGGPPXXPPXXXFFVXXKNXPPPP 550
           G G+   GG   PP    G  P +   G GGG P   P   F        P P
Sbjct: 5   GGGRGGRGGEQRPPYSGRGDVPGRGGGGGGGGAPPYRPASGFVWPPPGMTPRP 57


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
 Frame = +2

Query: 392 GGGXGKXXLGGXXXPPXXNXGPXKXX---KGXGGG-----PPXXPPXXXFFVXXKNXPPP 547
           GGG      GG   PP    G        +G GGG     PP   P   +F      PPP
Sbjct: 100 GGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPP 159

Query: 548 P 550
           P
Sbjct: 160 P 160



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 569 FFXXXXGGGGGXFXXTQKXXXGGGXXGXPPP 477
           ++    GGGGG     Q+   GGG    PPP
Sbjct: 112 YYPPPTGGGGGGGGGWQQGGGGGGAYPTPPP 142



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
 Frame = +3

Query: 381 PXXXGGGGEKXXWGGXXXPP-----XXIXXXXKXKKGGGGXPXXPPPXXXFL 521
           P   GGGG     GG   PP            +   GGGG    PPP   FL
Sbjct: 96  PYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFL 147


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 419 GGXXXPPXXNXGPXKXXKGXGGGPPXXPP 505
           GG    P    G      G GGGPP  PP
Sbjct: 94  GGGAPGPLGGGGARPPGGGGGGGPPSLPP 122


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = +2

Query: 434 PPXXNXGPXKXXKGXGGGPPXXPPXXXFFVXXKNXPPPPXXKXKKXGXXXKXXPXPP 604
           PP  +  P     G G G P  PP           PPPP       G      P PP
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAH----PAAPAPPPPAPSPSAAGAGSGPPPPPP 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,362,954
Number of Sequences: 37544
Number of extensions: 440242
Number of successful extensions: 1039
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)