Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L17
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68106-4|CAA92128.1|  112|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   2.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   2.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   2.8  
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   4.8  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   4.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   6.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   6.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   6.4  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   8.5  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   8.5  

>Z68106-4|CAA92128.1|  112|Caenorhabditis elegans Hypothetical
           protein F41E7.5 protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 392 GGGXGKXXLGGXXXPPXXNXGPXKXXKGXGGG 487
           GGG G+   GG    P  N GP +   G  GG
Sbjct: 38  GGGPGQFGRGGFGGGPGSNYGPGRGGFGGNGG 69


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 490 GXPPPPFXXFXXXXIXXGGXXXPPQXXFSPPPP 392
           G PPPP        +   G   PP    SPPPP
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP 267


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 490 GXPPPPFXXFXXXXIXXGGXXXPPQXXFSPPPP 392
           G PPPP        +   G   PP    SPPPP
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP 288


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 490 GXPPPPFXXFXXXXIXXGGXXXPPQXXFSPPPP 392
           G PPPP        +   G   PP    SPPPP
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP 273


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 17/53 (32%)
 Frame = -1

Query: 548 GGGGXFXXTQKXXXGGGXXGXPPPXLFXFXXXXNXXGGGXXXPPXXFFPXPPP 390
           GGG           G      PPP    +       GGG    P  + P PPP
Sbjct: 49  GGGFNNYGNGGGFGGNNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPP 101


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 419 GGXXXPPXXNXGPXKXXKGXGGGPPXXPP 505
           GG    P    GP +   G GGG P  PP
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGGGGPTGPP 643


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 353 GGXNFFXFXTXXXGGGXGKXXLGGXXXPPXXNXGPXKXXKGXGGGPP 493
           GG     +     GGG G    GG       N    +  +G GGGPP
Sbjct: 824 GGYQGGGYGGGYGGGGGGGGGGGGGSYHQPYNQDQRRGGRGGGGGPP 870


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 419 GGXXXPPXXNXGPXKXXKGXGGGPPXXPP 505
           GG    P    GP +   G GGG P  PP
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGGGGPTGPP 643


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = -3

Query: 501 GXXGGPPPXP-FXXXXGPXXXWGGXXXPPXXXFPXPPP 391
           G  G PPP P F     P     G   PP   F  PPP
Sbjct: 79  GPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPP 116


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 492 GGPPPXPFXXXXGPXXXWGGXXXPPXXXFPXPPP 391
           GGPPP P      P         PP    P PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 492 GGPPPXPFXXXXGPXXXWGGXXXPPXXXFPXPPP 391
           GGPPP P      P         PP    P PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 492 GGPPPXPFXXXXGPXXXWGGXXXPPXXXFPXPPP 391
           GGPPP P      P         PP    P PPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 484 PPPPFXXFXXXXIXXGGXXXPPQXXFSPPPP 392
           PPPP           GG   PP     PPPP
Sbjct: 772 PPPPPSAIPLPPRLQGGIPPPPPLGIIPPPP 802


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 484 PPPPFXXFXXXXIXXGGXXXPPQXXFSPPPP 392
           PPPP           GG   PP     PPPP
Sbjct: 772 PPPPPSAIPLPPRLQGGIPPPPPLGIIPPPP 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,461
Number of Sequences: 27780
Number of extensions: 255663
Number of successful extensions: 620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)