Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L15
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 333 9e-92
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 330 6e-91
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 1.1
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.1
05_04_0324 - 20273797-20274261 29 4.6
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 28 8.0
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 333 bits (819), Expect = 9e-92
Identities = 153/249 (61%), Positives = 190/249 (76%), Gaps = 1/249 (0%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 570
NW + + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 571 IMEIQLNGGTIEDKVKWAXXHLEKPIPVDSVFXQXEMIDCIGVTKGKGYKGVPSRWHTXX 750
+MEIQ+NGGTI DKV + EK IPVD+VF + EMID IGVTKGKGY+GV +RW
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 751 LPRKNTRVL 777
LPRK R L
Sbjct: 241 LPRKTHRGL 249
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 755 PVKT-QGS*KIACIGAWHPS 811
P KT +G K+ACIGAWHP+
Sbjct: 242 PRKTHRGLRKVACIGAWHPA 261
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 330 bits (812), Expect = 6e-91
Identities = 152/249 (61%), Positives = 189/249 (75%), Gaps = 1/249 (0%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 570
NW + + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
Query: 571 IMEIQLNGGTIEDKVKWAXXHLEKPIPVDSVFXQXEMIDCIGVTKGKGYKGVPSRWHTXX 750
+MEIQ+NGGTI DKV + EK IPVD+VF + EMID IGVTKGKGY+GV +RW
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 751 LPRKNTRVL 777
LPRK R L
Sbjct: 241 LPRKTHRGL 249
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 755 PVKT-QGS*KIACIGAWHPS 811
P KT +G K+ACIGAWHP+
Sbjct: 242 PRKTHRGLRKVACIGAWHPA 261
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 13 SLRLSSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 165
S+ S+S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 233 SMEPSTSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 468 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 584
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 127 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 300
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 301 VGYIETPHGLRAL 339
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 568 HIMEIQLNGGTIEDKVKWAXXHLEKPIPVDS 660
H++E + N ++++K+K H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,580,346
Number of Sequences: 37544
Number of extensions: 504778
Number of successful extensions: 1091
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -