Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L14
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    77   3e-15
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.59 
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.4  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   4.1  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   9.6  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   9.6  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   9.6  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 34/49 (69%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
 Frame = +2

Query: 281 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 424
           DF I+P + S  K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRP
Sbjct: 9   DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRP 57



 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 32/54 (59%), Positives = 42/54 (77%)
 Frame = +3

Query: 423 PISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVC 584
           PI++YV SG IN+D P+NPSSHEVV+W+K+IL+VEK G       +VTG LI+C
Sbjct: 57  PIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIIC 110


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 335 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 424
           P+LL   +  N   N  TP PFG SP+  P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 329 KRCPASSRSPKVRF*SRQLSEKLPTKHHPCFFSFSSLKVCRYRAAVPPSF 180
           KRC A+++  ++    R+L E LP K  P   S S+     Y +++ P F
Sbjct: 23  KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 363 KRSKFFNNKGQ*AVSSFFT 307
           K+SK+F+ +G   +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 635 KFLPXXXWDLRXXXXV*ANDKPTRNFGSSGP 543
           +FLP   W+      +  ND+P   F S  P
Sbjct: 418 EFLPPLSWEYSILKNILLNDEPGSTFDSGSP 448


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 47  YGRALCYIFKVLSIN 91
           YG+ L ++FKVLSIN
Sbjct: 79  YGKQLPFLFKVLSIN 93


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 435 YVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNG 536
           ++K   + +D P+N    E V+W++  L  E  G
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEG 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,504
Number of Sequences: 5004
Number of extensions: 58201
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)