Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L14
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 81 1e-15
03_03_0094 + 14378953-14380728 75 5e-14
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 54 2e-07
11_06_0293 + 22018128-22018556 38 0.012
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 38 0.012
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 29 4.4
11_06_0594 + 25349612-25352530 29 5.8
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 7.6
>07_03_1408 - 26353389-26355191
Length = 600
Score = 81.0 bits (191), Expect = 1e-15
Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Frame = +2
Query: 212 TLSEKKKKKNKDGVSLGAFQT---------IGDFKIEPSESVKKLDTAYWPLLLKNFDRL 364
T S+KKK K+KD + A + I+P V LDT+ WPLLLKN+DRL
Sbjct: 17 TKSKKKKIKSKDAATAAAVDPPSLAEAEAKTDGYLIKPQSLVPSLDTSTWPLLLKNYDRL 76
Query: 365 NVRTNHYTPLPFGNSPLKRP 424
NVRT HYTPLP G+SPLKRP
Sbjct: 77 NVRTGHYTPLPSGHSPLKRP 96
Score = 73.7 bits (173), Expect = 2e-13
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = +3
Query: 423 PISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCLN 590
PI++Y++ G IN+D PSNPSSHEVV+WIKR+L+V+K G +VTG LIVC++
Sbjct: 96 PIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVDKTGHSGTLDPKVTGNLIVCVD 151
>03_03_0094 + 14378953-14380728
Length = 591
Score = 75.4 bits (177), Expect = 5e-14
Identities = 32/47 (68%), Positives = 37/47 (78%)
Frame = +2
Query: 284 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 424
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRP
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRP 100
Score = 74.9 bits (176), Expect = 7e-14
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +3
Query: 423 PISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCLN 590
PI++Y++ G IN+D PSNPSSHEVV+WIKR+L+VEK G +VTG LIVC++
Sbjct: 100 PIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVD 155
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 423 PISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCLN 590
PI+ ++ G IN++ PSN SHEV++W K +L +EK +VTG LIVC+N
Sbjct: 23 PIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVCVN 78
>11_06_0293 + 22018128-22018556
Length = 142
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 492 VVSWIKRILKVEKNGSFXPARSEVTGWLIVCLN 590
VV+WIKR+L+V K G +VTG LIVC++
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVD 91
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 492 VVSWIKRILKVEKNGSFXPARSEVTGWLIVCLN 590
VV+WIKR+L+V K G +VTG LIVC++
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVD 130
>03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 415 KTPPSLITSNLASSTSTNRATPAPTK*F--HGLNVF*KSKKMGHSGPLDPKLR 567
K+ P+ + L+S++S + PAP K HG+N F + +K P+D K R
Sbjct: 884 KSNPTTLKMQLSSASSMSGKDPAPAKKHSNHGINFFDRFRK---ERPVDAKAR 933
>11_06_0594 + 25349612-25352530
Length = 972
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 429 SDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIV 581
SD+ + F+ D ++ H +RIL + +G F A E+T WL V
Sbjct: 159 SDHSQQAFLTGDSEADQQEH----LRRRILAEDDSGLFKEAADELTSWLTV 205
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 218 SEKKKKKNKDGVSLGAFQTIGDFK-IEPSESVKKLDTA 328
SEK ++ N+DG S+ A I DF E ++ + DTA
Sbjct: 1609 SEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTA 1646
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,514,800
Number of Sequences: 37544
Number of extensions: 378454
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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