Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L14
(806 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita ... 81 6e-15
BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita ... 81 6e-15
AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein. 81 6e-15
AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein. 81 6e-15
AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein. 81 6e-15
AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein. 81 6e-15
U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein. 80 8e-15
AB011085-1|BAA25439.2| 412|Homo sapiens KIAA0513 protein protein. 31 6.5
>BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein.
Length = 524
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 80.6 bits (190), Expect = 6e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein.
Length = 514
Score = 80.2 bits (189), Expect = 8e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 221 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 400
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFFIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 401 GNSPLKR 421
G++PLKR
Sbjct: 75 GSNPLKR 81
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 426 ISDYVKSGFINVDXPSNPSSHEVVSWIKRILKVEKNGSFXPARSEVTGWLIVCL 587
I DY+++GFIN+D PSNPSSHEVV+WI+RIL+VEK G +VTG LIVC+
Sbjct: 83 IGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCI 136
>AB011085-1|BAA25439.2| 412|Homo sapiens KIAA0513 protein protein.
Length = 412
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 223 EEKEKKQGWCFV--GSFSDNWRL-QNRTFGEREEAGHRLLAFVVEK 351
EE+EK++ WC + D+ R +N TFG+ H +LAF + K
Sbjct: 333 EEEEKREKWCHMTQEERDDSLRFNENITFGQLGTFTHNMLAFGLNK 378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,902,627
Number of Sequences: 237096
Number of extensions: 2104444
Number of successful extensions: 4533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4509
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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