Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L13
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0512 - 24460391-24462337                                         29   5.0  
08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367     29   5.0  
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913...    28   8.7  
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740...    28   8.7  

>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +2

Query: 236 TLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-------GCSTWLVSSERLWRP 394
           +L +++   +     +R L DLQ  W + R  +   E+       G + W + + ++W  
Sbjct: 561 SLEIQNGECKVEVLRLRCLKDLQFCWEELRELYPMLEFVEAQHCSGVANWPLDNNKVWTK 620

Query: 395 DVVLLNAAASTAGALRSPGPC 457
           D    NAA++ +    +P  C
Sbjct: 621 DAETSNAASAQSEEPTAPDVC 641


>08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367
          Length = 215

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 305 MNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAASTAGALRS 445
           M  +  RL   +  +G +T      R WR D V + AAA+ A A  S
Sbjct: 1   MEGVGARLGRTSARYGTTTTFTGPVRKWRKDWVPVAAAAAAAAAAAS 47


>10_08_0198 +
           15688142-15690427,15690524-15690607,15691232-15691336,
           15691420-15691528,15693037-15693188,15693278-15693583
          Length = 1013

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +1

Query: 733 PGXPXGPXXLSPGPXXGXPPXRXXXPXXXXPXXSLDPRXXXXXPPGSR 876
           P  P GP  L PGP     P     P    P   + P       PG+R
Sbjct: 516 PPPPFGPLGLPPGPMQPIGPNMSHSPGPLGPGVFIPPFPGHLVWPGAR 563


>02_05_1022 +
           33570664-33570976,33572206-33573440,33573873-33574013,
           33574242-33574796,33574914-33575015
          Length = 781

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = -3

Query: 539 GXDCXTGXXXWXXNVQALYPGDGAVIRYTGPESVVPRRCLQPRLAVPRQASTSVPRTPAK 360
           G D   G          ++PGDGA   +T   ++VP      R A    A+T     PA 
Sbjct: 217 GRDIYDGGCLMDVQHVQMFPGDGATTTHTTCLTMVPSSA-TARPAAKSTAATPERVFPAT 275

Query: 359 CCSPIPLRSXSVVCRSNSFED 297
             S IP  + + +  S  F +
Sbjct: 276 TASSIPSITSAAMVTSVPFNE 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,640
Number of Sequences: 37544
Number of extensions: 388533
Number of successful extensions: 1032
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)