Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_L13
(886 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 3e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 39 5e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 7e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.17
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 24 1.6
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.9 bits (94), Expect = 8e-06
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 170 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW 349
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 350 -GCSTWLVSSERLWRPDVVLLNAA 418
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.9 bits (94), Expect = 8e-06
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 170 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW 349
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 350 -GCSTWLVSSERLWRPDVVLLNAA 418
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 418
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 418
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 418
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 418
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 418
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 418
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.7 bits (91), Expect = 2e-05
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 221 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLW 388
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 389 RPDVVLLNAAASTAG 433
PD+VL N A G
Sbjct: 104 LPDIVLYNNADGEYG 118
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 218 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWR 391
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 392 PDVVLLNAA 418
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 218 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWR 391
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 392 PDVVLLNAA 418
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.9 bits (89), Expect = 3e-05
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 299 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 418
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.9 bits (89), Expect = 3e-05
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 188 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CST 361
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 362 WLVSSERLWRPDVVLLNAA 418
V SE +W PD+VL N A
Sbjct: 95 LHVPSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.1 bits (87), Expect = 5e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 299 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 418
++ W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 221 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 397
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 398 VVLLNAA 418
+L N A
Sbjct: 92 TILYNNA 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.9 bits (84), Expect = 1e-04
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 218 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWR 391
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 392 PDVVLLNAA 418
PD+VL N A
Sbjct: 111 PDIVLFNNA 119
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.9 bits (84), Expect = 1e-04
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 185 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTW 364
+R +G+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 365 L-VSSERLWRPDVVLLNAA 418
L + RLW+PDV++ N+A
Sbjct: 98 LRIPPHRLWKPDVLMYNSA 116
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 227 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVV 403
++ L ++H N+ E TV L++ W L W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 404 L 406
+
Sbjct: 122 M 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.001
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 260 IRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAASTAGAL 439
I E + T + + +W+D+RL + G+ + + R+W+PD N S +
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 440 RSP 448
SP
Sbjct: 104 TSP 106
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.5 bits (58), Expect = 0.17
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 302 QMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAASTAGALRSP 448
+ +W D RL + S + ER+WRPD N S + P
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVP 138
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 377 ERLWRPDVVLLNAAASTAGAL 439
+ LW+PD LNA S AL
Sbjct: 69 DSLWQPDPYFLNAKVSEIAAL 89
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,678
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 43
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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