Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L10
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   138   9e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   138   1e-33
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  138 bits (334), Expect = 9e-34
 Identities = 72/161 (44%), Positives = 95/161 (59%)
 Frame = +3

Query: 51  FQXPAMGLWDXIPXRGPVXHRGKVKCVP*XTTLPNLSIXLXXSGXKAGMTHXVREPDRPG 230
           F+ P  G    +P +     RGKVK  P       + +     G KAGMTH VR+ DRPG
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL-GYKAGMTHIVRDLDRPG 64

Query: 231 XXIXXKEIVXAXTIIXTPPMVXVXVVGYIDXPXGLRXLSTVWAEHMSEXXXXRFYXNWYI 410
             +  +EI+ A TII TPPMV V VVGY++ P GLR L+TVWAEH+SE    RFY NW+ 
Sbjct: 65  SKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFK 124

Query: 411 CMKKACXKXSQKWXDELGRXSXXKDFMKMIXYCSVVRVIAH 533
             KKA  K ++K+ +     S  ++  ++  YCSVVRV+AH
Sbjct: 125 SKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAH 163



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38  SHRKFSAPRHGSMGXYPXXRSRXSSW*GQVRAL-XDDPTXPVHXTXXIG 181
           SH KF  PRHGS+G  P  R R S   G+V+A   DD + PVH T  +G
Sbjct: 2   SHCKFEQPRHGSLGFLP--RKRASRQRGKVKAFPKDDASKPVHLTAFLG 48



 Score = 33.5 bits (73), Expect = 0.037
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 566 KARXMXIHLNGGTXXDKVKWXXQHLXK 646
           KA  M I +NGG+  DKV+W  +H  K
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEK 201


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  138 bits (333), Expect = 1e-33
 Identities = 71/161 (44%), Positives = 95/161 (59%)
 Frame = +3

Query: 51  FQXPAMGLWDXIPXRGPVXHRGKVKCVP*XTTLPNLSIXLXXSGXKAGMTHXVREPDRPG 230
           F+ P  G    +P +     RGKVK  P       + +     G KAGMTH VR+ DRPG
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFL-GYKAGMTHIVRDLDRPG 64

Query: 231 XXIXXKEIVXAXTIIXTPPMVXVXVVGYIDXPXGLRXLSTVWAEHMSEXXXXRFYXNWYI 410
             +  +EI+ A T+I TPPMV V VVGY++ P GLR L+TVWAEH+SE    RFY NW+ 
Sbjct: 65  SKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFK 124

Query: 411 CMKKACXKXSQKWXDELGRXSXXKDFMKMIXYCSVVRVIAH 533
             KKA  K ++K+ +     S  ++  ++  YCSVVRV+AH
Sbjct: 125 SKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAH 163



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38  SHRKFSAPRHGSMGXYPXXRSRXSSW*GQVRAL-XDDPTXPVHXTXXIG 181
           SH KF  PRHGS+G  P  R R S   G+V+A   DD + PVH T  +G
Sbjct: 2   SHCKFEQPRHGSLGFLP--RKRASRQRGKVKAFPKDDASKPVHLTAFLG 48



 Score = 33.5 bits (73), Expect = 0.037
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 566 KARXMXIHLNGGTXXDKVKWXXQHLXK 646
           KA  M I +NGG+  DKV+W  +H  K
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEK 201


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -1

Query: 566 SLVAVXQXHXXVGNDSYNTTVXDHLHEIFXX*XASKFIXPFLTGFXAS 423
           +L+   + H  +GND+Y   + D  H          F  P + G  AS
Sbjct: 140 NLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTAS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,601
Number of Sequences: 5004
Number of extensions: 27315
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)