Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L07
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   4.9  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   4.9  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   4.9  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   4.9  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   4.9  

>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
 Frame = -2

Query: 667 LVRASXELTR*TAVVQNRADRARNGNRHDLTARKIRGRP-------------ENAGPDPV 527
           L R++  +T  T  VQ R   AR GNR  ++    +GRP              N GPD V
Sbjct: 162 LFRSTEPIT--TRPVQRRPMLARRGNRAGVSRTAAQGRPLQDEIGAEMAALLRNMGPDSV 219

Query: 526 RNVRRFSRV 500
            ++RRF+ +
Sbjct: 220 EDIRRFTEM 228


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 453 LTR*NEHNARTSTRPGTGRIRFPSKPDT 370
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 453 LTR*NEHNARTSTRPGTGRIRFPSKPDT 370
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 453 LTR*NEHNARTSTRPGTGRIRFPSKPDT 370
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 453 LTR*NEHNARTSTRPGTGRIRFPSKPDT 370
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 421 IDQARHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 266
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,440
Number of Sequences: 27780
Number of extensions: 392922
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)