Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_L02
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.010
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.072
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.072
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.096
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.67 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 743 PPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXPXXAL 880
           PP  P     PPLPA G     P PP+    PP P   P  P  ++
Sbjct: 447 PPLPPSAPIAPPLPA-GMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = +2

Query: 731 PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXPXXA 877
           P   PP  PG R  P LP  G       PP        P  PP  P  A
Sbjct: 388 PPAPPPAIPG-RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = +2

Query: 731 PSXTPPXSPGXRXXPPLPAXGRXGXXPPP----PSXGXXPP 841
           P   PP         PLP  GR    PPP    PS G  PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +2

Query: 743 PPXSPGXRXXPPLPAXGRXGXXP-PPPSXGXXPPXPXTPP 859
           PP  P  R    +P+       P PPPS G     P +PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +2

Query: 731 PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXP 868
           P   PP  P     PP    G     P PPS    PP P   P  P
Sbjct: 424 PPSAPPSLPPSA--PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 731 PSXTPPXSPGXRXXPPLPAXGRXGXXPPPP 820
           P   PP S   R  PP+         PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = +2

Query: 731 PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXP 868
           PS   P +P     PP  A  R     PPPS    PP P   P  P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSI--PPPSPASAPPIPSKAPPIP 168



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = +2

Query: 734 SXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXPXXALXLP 889
           S  PP +P     PP P          PP     PP P + P  P  A  +P
Sbjct: 121 SAAPPSAPA----PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = +2

Query: 743 PPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXPXXALXLP 889
           PP SP     PP+P+       PP PS    P  P  P   P  A  LP
Sbjct: 150 PPPSPA--SAPPIPSKA-----PPIPSSLPPPAQPAAPVKSPPSAPSLP 191


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 740 TPPXSPGXRXXPPLPAXGRXGXXPPPPSX-GXXPPXPXTPP 859
           TP  +P     PP P  G     PPPP   G  PP P  PP
Sbjct: 743 TPAPAP-IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +2

Query: 743 PPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXP 868
           P  +P     PP PA    G  PPPP  G     P  PP  P
Sbjct: 742 PTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 746 PXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTP 856
           P  P      P PA       PP P  G  PP P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +2

Query: 731  PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXP-PXPXTPPXXPXXALXLP 889
            PS  PP        PP+PA        P P+ G  P P P   P  P  ++ +P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 734  SXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXP-PXPXTPPXXPXXALXLP 889
            S  PP        PP+P         P PS G  P P P T P  P  +  LP
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSE-APPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
 Frame = +2

Query: 731  PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXP---PXPXTPPXXP 868
            PS   P  P     PP+P         P PS G  P   P    PP  P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/53 (26%), Positives = 17/53 (32%)
 Frame = +2

Query: 731  PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTPPXXPXXALXLP 889
            PS  PP        PP+P        P P       P P   P  P  ++  P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +2

Query: 731  PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPXTP-PXXPXXALXLP 889
            PS  PP        PP+PA       P P       P P +  P  P  A  +P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
 Frame = +2

Query: 731  PSXTPPXSPGXRXXPPLPAXGRXGXXPPPPSXGXXPPXPX---TPPXXPXXALXLP 889
            PS  PP        P +PA       PP P+    PP P      P  P  ++ +P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPS---GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 223 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 324
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
 Frame = +2

Query: 731  PSXTPPXSPGXRXXPPLPAXGRXGXX---PPPPSXGXXPPXPXTPPXXPXXALXLP 889
            P  TPP  P     P + A          PPPPS    P  P + P  P  A   P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 809 PPPPSXGXXPPXPXTPPXXP 868
           PPPP  G  PP    PP  P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 301 FPCVPTQSFVDPIHLKICQYPHGGL 227
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/49 (36%), Positives = 19/49 (38%)
 Frame = -1

Query: 888 GXSRAXXGXXGGVXGWGGXXPLXGGGGXXPXRPXAGXGGXXRXPGDXGG 742
           G      G  GG  G+GG  P   GGG        G GG    PG  GG
Sbjct: 225 GFGGGPGGFEGGPGGFGG-GPGGFGGGLGGF--GGGPGGFGGGPGGHGG 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,991
Number of Sequences: 5004
Number of extensions: 38707
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)