Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_K22
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.35
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.3
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 7.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 10.0
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 10.0
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 10.0
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.35
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERR 315
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 699 SGNXPGPPXXGRXPVPGXAPFPSXXGXXPPGPQP 800
S P PP P P P P+ PP P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = -2
Query: 799 GXGPGGXXPXXEGXGAXP---GTGXRPXXGGPGXF 704
G GPGG G G P G G GGPG F
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 696 SSGNXPGPPXXGRXPVPGXAPFPSXXGXXPPGPQP 800
S+ + P PP R G P P PP P P
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Frame = +3
Query: 711 PGPPXXGRXPVPGXAPFP-----SXXGXXPPGPQPXXXRGSRXP 827
P PP P P AP P G PP P P G+ P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 379 C*TRLQPPPGTTLSAPVYLITAPSPGIKRLDISTP 483
C L+PPP + + Y ++ PSP + IS P
Sbjct: 149 CQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKP 183
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 457 IKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 558
+KR DI + DNW ND+ C + G +H+
Sbjct: 600 VKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 244 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 137
G ++ S+S ++ ++DY G+P+V + E VD E
Sbjct: 11 GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 303 VGTQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWDKA 464
+G G+W TW + R W DV + ++ + + LR ++ N S D+A
Sbjct: 179 LGNTGDWIYDTWSDNELRTWLHDVGVPISSHESTRSHLLR-KLKNYISTKADEA 231
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 448 SPGIKRLDISTPISMQLDN-WPNDMQTCTFKFGSRMHNSDXMDXVIDKXXY 597
SP IK ++ T WP D+ T FG+ D D + D+ Y
Sbjct: 85 SPIIKNIEGRTKYGEAYHGYWPQDLYTLNPHFGTEQDLIDLADALHDRGMY 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,166
Number of Sequences: 5004
Number of extensions: 52911
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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