Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_K20
         (967 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.78 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.6  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 18/62 (29%), Positives = 20/62 (32%)
 Frame = +2

Query: 710 PAPPHTRXXPXTXXGAXRPAXRXXPXRXPKPKPPXXXXMRXXXAXXLKXRARXPQTPXXP 889
           P PPH R        A     R  P   P+P+PP     R   A     R      P  P
Sbjct: 81  PRPPHPRLRREAESEAEPGNNR--PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138

Query: 890 RP 895
            P
Sbjct: 139 HP 140



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
 Frame = +2

Query: 710 PAPPHTRXX--PXTXXGAXRPAXRXXPXRXPKPKPPXXXXMRXXXAXXLKXRARXPQTPX 883
           P PPH R    P    G  RP         P+P+PP     R   A     R      P 
Sbjct: 109 PRPPHPRLRREPEAEPGNNRPVY------IPQPRPPHPRLRREPEAEPGNNRPVYIPQPR 162

Query: 884 XPRP 895
            P P
Sbjct: 163 PPHP 166


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/35 (28%), Positives = 12/35 (34%)
 Frame = +3

Query: 624 RXXVGGXXPPXXPXXLXPXPXXPXXAXAXPRPPTP 728
           R   GG  PP     + P P     +   P P  P
Sbjct: 402 RSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMP 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,138
Number of Sequences: 438
Number of extensions: 3359
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)