Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_K16
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.8
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.8
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 27 3.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 7.4
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 9.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.8
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 9.8
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 9.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 533 PPRVEPPRSNYTFAGAPFPPRAEVATPP 450
PP PPRSN P PP+ A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 518 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 360
PP SNY A P+ P++ A PP S R R+ P + PG + G
Sbjct: 98 PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153
Query: 359 SDRPDRDRALRTSQRGDV 306
S RP A R + DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 267 YGAPVWCHALTRQNVAALRRPQRAIAVRAIRG 362
YG C LT +N++A R Q AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -2
Query: 572 RVRQAARPRLQHGP--PRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 438
R RQ R R P PRV P Y +PP A P GS
Sbjct: 244 RARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNASGS 290
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 349 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATSALGGKGAPAKV*FERGGST 525
G+ D P PS R C H G+ + + +TGG + G G A V F R GS
Sbjct: 14 GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68
Query: 526 LGGPC 540
L C
Sbjct: 69 LVISC 73
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/55 (25%), Positives = 21/55 (38%)
Frame = -2
Query: 410 WRPGEQARRLEGDGAVSSDRPDRDRALRTSQRGDVLAGQGVAPYGRAV*CHRPHH 246
W R + A + DR + +R LRT G + + G+ V P H
Sbjct: 476 WIRHRAVARAREEDADALDRKEEERELRTRGEGATVETENYVENGKLVTSEMPQH 530
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 186 SESRLSPSAEGPTSQSERGSSTDHP 112
S+ S A+GP+SQ+ G ST P
Sbjct: 508 SKENKSSVADGPSSQAHNGPSTQPP 532
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 623 PVRENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPP 474
P+ +++ D D Q P++Q R EP SN+ + PFPP
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSSNHVRSCPPFPP 165
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 325 VRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPI 447
VRS+ S S S+DT PS G + T R R+L +
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLNKPTIERERNLKL 366
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 389 RRLEGDGAVSSDRPDRDRALRTSQRGDVLAGQGVAPYGR-AV*CHRPHHPHVEAARHLIG 213
RRLE + A S +R RA ++ G L G+G P R C + H L G
Sbjct: 907 RRLEQELAKSQKNWERRRARHAAKEGINLNGEGRKPTTRKCSNCGQVGHMKTNKICPLFG 966
Query: 212 TPD 204
P+
Sbjct: 967 RPE 969
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,538
Number of Sequences: 5004
Number of extensions: 42452
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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