Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_K13
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.9  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   9.9  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   9.9  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
 Frame = +2

Query: 524 KRAKSWLDPNVQXXXGDCXSX-----GLSNPXXLKXFXPXGXPKIXPXGLXGFGAPXG 682
           K    WLD N      +         G++NP   K +   G P   P G+ G GAP G
Sbjct: 573 KETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQAGGAPGGAPGGMPG-GAPGG 629


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/69 (26%), Positives = 18/69 (26%)
 Frame = +2

Query: 599 PXXLKXFXPXGXPKIXPXGLXGFGAPXGXXXPXXXXPPXXXPPXXXXXXXXPPGXXXPPP 778
           P  L    P   P   P  L   GAP     P         P         PP    PPP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLP-MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478

Query: 779 XKXXPPGFP 805
                P  P
Sbjct: 479 APAPAPAAP 487


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 707 PPXXXPPXXXXXXXXPPGXXXPPPXKXXPPGF 802
           PP   PP        PP    PPP    PPG+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP----PPGY 32



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 752 PPGXXXPPPXKXXPPGFPP 808
           PPG   PPP    PPGF P
Sbjct: 5   PPGNPPPPPP---PPGFEP 20


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
 Frame = +2

Query: 656  LXGFGAPXGXXXPXXXXPPXXXPPXXXXXXXXPPGXXXPPPXKXXP-PGFPP 808
            L G  AP          P    PP        PP    PPP    P P  PP
Sbjct: 1677 LFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 464 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 315
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 224 ATPLMSPYNARLESSSTGSSFPADSPKL 141
           +T    PY A  + ++TGSSF AD  K+
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWKM 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,988
Number of Sequences: 5004
Number of extensions: 56632
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)