Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_K08
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 31 0.82
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.82
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 30 2.5
02_04_0452 + 23044190-23045227 29 3.3
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.3
08_02_0875 + 22103903-22106293 29 4.4
04_01_0041 - 464695-464850,467485-469029 29 5.8
01_05_0227 - 19512866-19514983 29 5.8
11_01_0385 + 2915532-2916482 28 7.7
06_03_1310 + 29238644-29240260 28 7.7
06_01_1007 + 7846266-7846526,7848368-7848420,7849231-7849432,784... 28 7.7
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.7
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.82
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.82
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTP 604
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 631
I PPSPA + S+R S +PR F TP T T+ S +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 602
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>08_02_0875 + 22103903-22106293
Length = 796
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLDAVLKGV 655
P+P ++A S R NP+ PDL + +N L A GV
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGV 545
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Frame = +3
Query: 507 WRSRPYASSHPPLRSRLHQPDHQIPD----SIHQPPQT*HPFPSIPWTP 641
W P SHPP P +Q P H PP P P W P
Sbjct: 245 WPPLPPFPSHPPPTPAWPHPGNQWPPLPPFPFHPPPMPAWPHPGNQWPP 293
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 474 AGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPWTP 641
A HPF S ++ P + P R+ L H+ P H PP+ P P P +P
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPL--APHRSPLPHHMPPRRTPPTPPPPSSP 404
>06_01_1007 +
7846266-7846526,7848368-7848420,7849231-7849432,
7849526-7849609,7850005-7850188,7850605-7850741,
7850875-7850939,7851093-7851762
Length = 551
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 593 PTTPDLTSISINPLDAVLKGVRAGV*SLRCHXXLHQRISPP 715
P PD + + P+ ++LKGV AGV L L+ R PP
Sbjct: 226 PLMPDAINFKLVPITSLLKGV-AGVGFLSHAINLYLRYKPP 265
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,554,863
Number of Sequences: 37544
Number of extensions: 501441
Number of successful extensions: 1520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -