Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_K07
         (992 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       32   0.82 
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    31   1.4  
08_02_1084 - 24232968-24234779                                         30   3.3  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   5.8  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           29   7.6  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +1

Query: 808 GGGXGSXPGXPAPGXXXXPXPRPXXXXGPGGXPXSPRSXXGGXXXGG 948
           GGG G  P    PG       RP    G GG   +PR   GG   GG
Sbjct: 110 GGGGGGGPPSLPPGAGGGGGARPPAPGG-GGGGGAPRRVLGGGGGGG 155



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = -1

Query: 977 ARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPGXEPXPP 810
           AR     G   P S PP    G    PP P    G G       G G  G    PP
Sbjct: 106 ARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPP 161



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +1

Query: 808 GGGXGSXPGXPAPGXXXXPXPRPXXXXGPGGXPXSPRSXXGGXXXGG 948
           GGG G     P  G       RP    G GG P   R+  GG   GG
Sbjct: 150 GGGGGGALARPPGGGRGGALGRPPGGGGGGGGPG--RAPGGGGGGGG 194



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
 Frame = +1

Query: 808 GGGXGSXPGXP--APGXXXXPXPRPXXXXGPGGXPXSPRSXXGGXXXGG 948
           GGG G   G P    G    P   P    G GG   +P    GG   GG
Sbjct: 162 GGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGG 210


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +1

Query: 808 GGGXGSXPGXPAPGXXXXPXPRPXXXXGPGGXPXSPRSXXGGXXXGG 948
           G G G+  G PAP       P P    G GG    P S  GG   GG
Sbjct: 46  GAGGGADGGSPAP---RAASPPPTAAGGQGGGGGGPVSGGGGSAPGG 89


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -1

Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPGXEPXP 813
           PP   PP    G+   P G       G G   FPGA  PG  P P
Sbjct: 362 PPPMLPPGGMMGQAFDPTGYGAMGRMGAGFGGFPGA--PGAGPFP 404


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
 Frame = -2

Query: 589  TXGDWGXGPXXXPXXGGVPXPTXXGGXXXG--DPXXXXXXGG----XTPPXXXPXWGFPP 428
            T GD+G  P       G P P    G   G   P      GG      PP      G PP
Sbjct: 1091 TLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPP 1150

Query: 427  XPXXXRLXXXP 395
             P    L   P
Sbjct: 1151 PPPVGGLGGPP 1161



 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = -1

Query: 956  GXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPGXEPXPPP 807
            G  PP   PP    G    PP P    G G G    P  G  G  P PPP
Sbjct: 1120 GVPPP---PPIGGLGGHQAPPAPPLPEGIG-GVPPPPPVGGLGGPPAPPP 1165


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 808 GGGXGSXPGXPAPGXXXXPXPRPXXXXGPGGXPXSPRSXXG 930
           GG  GS P  P+ G             G GG P +P S  G
Sbjct: 141 GGAYGSSPSTPSGGGSSPTPSHGGGAYGGGGAPATPASHDG 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.145    0.491 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,663
Number of Sequences: 37544
Number of extensions: 304496
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)