Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_K07
(992 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U19927-1|AAC50140.1| 502|Homo sapiens WAS protein. 36 0.30
U12707-1|AAA62663.1| 502|Homo sapiens Wiskott-Aldrich syndrome ... 36 0.30
BC012738-1|AAH12738.1| 502|Homo sapiens Wiskott-Aldrich syndrom... 36 0.30
BC002961-1|AAH02961.1| 514|Homo sapiens WAS protein protein. 36 0.30
AF115549-1|AAD26691.1| 502|Homo sapiens Wiskott-Aldrich Syndrom... 36 0.30
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 33 2.1
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 33 2.1
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 33 2.1
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 33 2.1
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 30 3.0
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 30 3.0
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 30 3.0
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 30 3.0
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 30 3.0
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 30 3.0
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 30 3.0
BC096211-1|AAH96211.1| 309|Homo sapiens PRB3 protein protein. 31 4.9
BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein. 31 4.9
BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein. 31 4.9
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 31 6.5
M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collage... 31 6.5
BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein. 31 6.5
BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein. 31 6.5
BC096296-1|AAH96296.1| 427|Homo sapiens COL8A2 protein protein. 31 6.5
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 31 6.5
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 31 6.5
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 31 6.5
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 31 6.5
AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alph... 31 6.5
AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein. 31 6.5
X98708-1|CAA67264.1| 94|Homo sapiens COL1A1 and PDGFB fusion t... 31 8.6
X98707-1|CAA67263.1| 104|Homo sapiens COL1A1 and PDGFB fusion t... 31 8.6
X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (... 31 8.6
S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein. 31 8.6
BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein. 31 8.6
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 8.6
>U19927-1|AAC50140.1| 502|Homo sapiens WAS protein.
Length = 502
Score = 35.5 bits (78), Expect = 0.30
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGR-GXGSXXFPGAGXPGXEPXPPP 807
P PP RG G PP P GR G PGAG P P PPP
Sbjct: 354 PTPRGPPPPGRG--GPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPP 399
>U12707-1|AAA62663.1| 502|Homo sapiens Wiskott-Aldrich syndrome
protein protein.
Length = 502
Score = 35.5 bits (78), Expect = 0.30
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGR-GXGSXXFPGAGXPGXEPXPPP 807
P PP RG G PP P GR G PGAG P P PPP
Sbjct: 354 PTPRGPPPPGRG--GPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPP 399
>BC012738-1|AAH12738.1| 502|Homo sapiens Wiskott-Aldrich syndrome
(eczema-thrombocytopenia) protein.
Length = 502
Score = 35.5 bits (78), Expect = 0.30
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGR-GXGSXXFPGAGXPGXEPXPPP 807
P PP RG G PP P GR G PGAG P P PPP
Sbjct: 354 PTPRGPPPPGRG--GPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPP 399
>BC002961-1|AAH02961.1| 514|Homo sapiens WAS protein protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.30
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGR-GXGSXXFPGAGXPGXEPXPPP 807
P PP RG G PP P GR G PGAG P P PPP
Sbjct: 366 PTPRGPPPPGRG--GPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPP 411
>AF115549-1|AAD26691.1| 502|Homo sapiens Wiskott-Aldrich Syndrome
protein protein.
Length = 502
Score = 35.5 bits (78), Expect = 0.30
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGR-GXGSXXFPGAGXPGXEPXPPP 807
P PP RG G PP P GR G PGAG P P PPP
Sbjct: 354 PTPRGPPPPGRG--GPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPP 399
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 32.7 bits (71), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 983 PXARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGA-GXPGXEPXP 813
P +N PP + P ++G+ G PPGP G G+ PG G PG EP P
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTG-PPGPQGLQGL-PGTGGPPGENGKPG-EPGP 661
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 32.7 bits (71), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 983 PXARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGA-GXPGXEPXP 813
P +N PP + P ++G+ G PPGP G G+ PG G PG EP P
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTG-PPGPQGLQGL-PGTGGPPGENGKPG-EPGP 661
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 32.7 bits (71), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 983 PXARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGA-GXPGXEPXP 813
P +N PP + P ++G+ G PPGP G G+ PG G PG EP P
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTG-PPGPQGLQGL-PGTGGPPGENGKPG-EPGP 661
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 32.7 bits (71), Expect = 2.1
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 983 PXARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGA-GXPGXEPXP 813
P +N PP + P ++G+ G PPGP G G+ PG G PG EP P
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTG-PPGPQGLQGL-PGTGGPPGENGKPG-EPGP 661
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 29.9 bits (64), Expect(2) = 3.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXPG 828
PP + PP PP P G G S PGAG PG
Sbjct: 249 PPGALPPGIPPAMP-PPPMPPGAAGHGPPSAGTPGAGHPG 287
Score = 21.0 bits (42), Expect(2) = 3.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 848 PGAGXPGXEPXPPP 807
P AG PG PPP
Sbjct: 322 PHAGPPGSGGQPPP 335
>BC096211-1|AAH96211.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 432 GXPQXGXXXGGVXPPXXXXXXGSPXXXPPX--SVGXGTPPXXGXXXGPXPQ 578
G P+ GG P G P PP + G PP G GP PQ
Sbjct: 34 GKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQ 84
>BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 432 GXPQXGXXXGGVXPPXXXXXXGSPXXXPPX--SVGXGTPPXXGXXXGPXPQ 578
G P+ GG P G P PP + G PP G GP PQ
Sbjct: 34 GKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQ 84
>BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 31.5 bits (68), Expect = 4.9
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 432 GXPQXGXXXGGVXPPXXXXXXGSPXXXPPX--SVGXGTPPXXGXXXGPXPQ 578
G P+ GG P G P PP + G PP G GP PQ
Sbjct: 34 GKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQ 84
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXP--GXEPXPP 810
PP S P G PP P G G G PG G P G P P
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 216
>M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collagen
protein.
Length = 635
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXG-RGXGSXXFPGAGXPGXEPXPP 810
PP +GE G PPG G G G PGA G P PP
Sbjct: 118 PPGFQGEPGPQGEPG-PPGDRGLKGDNGVGQPGLPGAPGQGGAPGPP 163
>BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXG-RGXGSXXFPGAGXPGXEPXPP 810
PP +GE G PPG G G G PGA G P PP
Sbjct: 137 PPGFQGEPGPQGEPG-PPGDRGLKGDNGVGQPGLPGAPGQGGAPGPP 182
>BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXG-RGXGSXXFPGAGXPGXEPXPP 810
PP +GE G PPG G G G PGA G P PP
Sbjct: 137 PPGFQGEPGPQGEPG-PPGDRGLKGDNGVGQPGLPGAPGQGGAPGPP 182
>BC096296-1|AAH96296.1| 427|Homo sapiens COL8A2 protein protein.
Length = 427
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXG-RGXGSXXFPGAGXPGXEPXPP 810
PP +GE G PPG G G G PGA G P PP
Sbjct: 183 PPGFQGEPGPQGEPG-PPGDRGLKGDNGVGQPGLPGAPGQGGAPGPP 228
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXP--GXEPXPP 810
PP S P G PP P G G G PG G P G P P
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 216
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXP--GXEPXPP 810
PP S P G PP P G G G PG G P G P P
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 216
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXP--GXEPXPP 810
PP S P G PP P G G G PG G P G P P
Sbjct: 96 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 143
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPGAGXP--GXEPXPP 810
PP S P G PP P G G G PG G P G P P
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 216
>AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alpha 2
protein.
Length = 703
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXG-RGXGSXXFPGAGXPGXEPXPP 810
PP +GE G PPG G G G PGA G P PP
Sbjct: 183 PPGFQGEPGPQGEPG-PPGDRGLKGDNGVGQPGLPGAPGQGGAPGPP 228
>AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein.
Length = 705
Score = 31.1 bits (67), Expect = 6.5
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXG-RGXGSXXFPGAGXPGXEPXPP 810
PP +GE G PPG G G G PGA G P PP
Sbjct: 185 PPGFQGEPGPQGEPG-PPGDRGLKGDNGVGQPGLPGAPGQGGAPGPP 230
>X98708-1|CAA67264.1| 94|Homo sapiens COL1A1 and PDGFB fusion
transcript protein.
Length = 94
Score = 30.7 bits (66), Expect = 8.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 983 PXARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPG-AGXPGXEPXPPP 807
P ++ PP + P ERGE G P G G G PG AG PG + P P
Sbjct: 22 PAGKDGEAGAQGPPGPAGPAGERGEQG-PAGSPGFQGL-PGPAGPPGEAGKPGEQGDPIP 79
>X98707-1|CAA67263.1| 104|Homo sapiens COL1A1 and PDGFB fusion
transcript protein.
Length = 104
Score = 30.7 bits (66), Expect = 8.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 983 PXARNXHXXGXXPPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPG-AGXPGXEPXPPP 807
P ++ PP + P ERGE G P G G G PG AG PG + P P
Sbjct: 41 PAGKDGEAGAQGPPGPAGPAGERGEQG-PAGSPGFQGL-PGPAGPPGEAGKPGEQGDPIP 98
>X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (714
AA) protein.
Length = 714
Score = 30.7 bits (66), Expect = 8.6
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 947 PPXSSPPXXERGEXGXPPGPXXXXGRGXGSXXFPG-AGXPGXEPXP 813
PP + P ERGE G PGP G G PG AG PG + P
Sbjct: 143 PPGPAGPAGERGEQG-APGPSGFQGL-PGPPGPPGEAGKPGDQGVP 186
>S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein.
Length = 382
Score = 30.7 bits (66), Expect = 8.6
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 438 PQXGXXXGGVXPPXXXXXXGSPXXXPPXSVGX--GTPPXXGXXXGPXPQ 578
PQ GG P G P PP G PP G GP PQ
Sbjct: 2 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 50
>BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein.
Length = 710
Score = 30.7 bits (66), Expect = 8.6
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Frame = -1
Query: 956 GXXPPXSSPPXXERGEXGX-----PPGPXXXXGRGXGSXXFPGAGXPG 828
G PP PP G G PPGP RG G PG G PG
Sbjct: 7 GGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGG---PGGGGPG 51
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 30.7 bits (66), Expect = 8.6
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 423 GXGGXPQXGXXXGGVXPPXXXXXXGSPXXXPPXSVGXGTPPXXGXXXGPXPQSP 584
G G P G G PP G P PP PP GP P P
Sbjct: 184 GKAGPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPP 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.145 0.491
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,033,823
Number of Sequences: 237096
Number of extensions: 1746051
Number of successful extensions: 4842
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4630
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13324901280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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