Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_K02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.27 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
 Frame = +3

Query: 276 LKTPXXPGXPKXTPXGGXTG---PPXXIFXGGXGGFXPPPSXXGSXPXXXXPPPXKPPP 443
           LK+P  P      P         PP     GG     PPP   G+ P    PPP  PPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP----PPPPPPPP 783



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 382 GGXKPPXPPXKIXXGGPVXPP 320
           GG  PP PP  +   GP  PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 399 SXPXXXXPPPXKPPPFXPXXKXPP 470
           S P    PPP  PP F P  + PP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPP 26



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 366 GGFXPPPSXXGSXPXXXXPPPXKPPP 443
           G   PPP   G  P    PPP  PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP--PPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,110
Number of Sequences: 5004
Number of extensions: 31184
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)