Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_J07
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.45 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 214 VRVHRADTGRSSNELDRQTTELERR 288
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
 Frame = +1

Query: 625  SXPPPXPXPXXPXPGXXAP---PXXXXPXS--XXRRXSXXA-PXPXPRXAXRXXPXXRGX 786
            S PPP P P    P   AP   P    P       + S  A P P P  A    P   G 
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA 1120

Query: 787  PP 792
            PP
Sbjct: 1121 PP 1122



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +1

Query: 634  PPXPXPXXPXPGXXAPPXXXXPXSXXRRXSXXAPXPXPRXAXRXXPXXRGXPP 792
            PP P P    P          P S     S   P P P       P   G PP
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = +1

Query: 625  SXPPPXPXPXXPXPGXXAPPXXXXPXSXXRRXSXXAPXPXPRXAXRXXPXXRG---XPPP 795
            S  PP P P    P   AP     P    +  +   P P P  A        G    PPP
Sbjct: 1156 SGAPPVPKPSVAAPPVPAPSSGIPP--VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213

Query: 796  XXGPP 810
               PP
Sbjct: 1214 STAPP 1218



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +1

Query: 631  PPPXPXPXXPXPGXXAPPXXXXPXSXXRRXSXXAPXPXPRXAXRXXPXXRGXPP 792
            P P   P  P P   APP            S   P P P  A    P   G PP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPV--------PSGAPPVPKPSVAAPPVPAPSGAPP 1160



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +1

Query: 631  PPPXPXPXXPXPGXXAPPXXXXPXSXXRRXSXXAPXPXPRXAXRXXPXXRGXPPPXXGP 807
            PPP   P  P P    PP            S   P P P       P      PP   P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP--------PSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/57 (26%), Positives = 16/57 (28%)
 Frame = +1

Query: 625 SXPPPXPXPXXPXPGXXAPPXXXXPXSXXRRXSXXAPXPXPRXAXRXXPXXRGXPPP 795
           S PPP P    P P    P     P          +P   P       P     PPP
Sbjct: 148 SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 283 VPTQSFVDPIHLKICQYPHGGL 218
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 610 AIXXGSXPPPXPXPXXPXPGXXAPP 684
           ++  G+ PPP P P    P    PP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPP 27


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 345 RQASTSVPRTPAKCCSPIRPAFQLSRLSI 259
           RQ+S+S   TP+   S  + +F LS LSI
Sbjct: 764 RQSSSSSSFTPSSAISTAKSSFVLSTLSI 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,940
Number of Sequences: 5004
Number of extensions: 37723
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)