Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_J07
(818 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.002
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.64
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.64
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 25 0.84
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 5.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 5.9
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 7.8
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 259
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 260 IDKRLSWNAGR 292
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.002
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 250
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 251 MNWIDKRLSWNA 286
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.64
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 113 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 277
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 278 WNAGRMG 298
WN G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.64
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 113 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 277
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 278 WNAGRMG 298
WN G
Sbjct: 118 WNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.84
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.0 bits (52), Expect = 0.84
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 259
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 260 IDKRLSWNAGRMGLQHLA 313
D RL++ R G++ L+
Sbjct: 68 TDPRLAFKK-RTGVETLS 84
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.9
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 259
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 260 IDKRLSWNAGRMGLQHLA 313
D RL++ R G++ L+
Sbjct: 68 TDPRLAFKK-RTGVETLS 84
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 5.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGRMG 298
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 5.9
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = +1
Query: 730 APXPXPRXAXRXXPXXRGXPPPXXGPP 810
+P P+ R P PP GPP
Sbjct: 26 SPHQSPQAPQRGSPPNPSQGPPPGGPP 52
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.8 bits (44), Expect = 7.8
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +1
Query: 625 SXPPPXPXPXXPXPGXXAP 681
S PP P P P P P
Sbjct: 335 SDTPPKPAPPPPPPSSSGP 353
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,449
Number of Sequences: 438
Number of extensions: 4085
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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