Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_J06
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 29 0.61
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 29 1.1
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 1.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.2
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 4.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 7.5
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 9.9
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 25 9.9
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 9.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 9.9
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 367 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 254
P P+S G SRG SS++Q++ + ++ G + E Q
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 540 FDLRGPRYGLVEHRDWANGGGGGIDAPSREGD 445
F+L Y L E +W GG G+ AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 7 VAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQG 186
+ FD + H+ LI L + R + +IR L N + T +R ++ G PQG
Sbjct: 371 IKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQG 424
Query: 187 SALSP 201
S +SP
Sbjct: 425 SIVSP 429
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 588 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 484
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 522 RYGLVEHRDWANGGGGGIDAPSREGD 445
+Y L+E +DW GG GI P+ + +
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAE 218
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 419 SPSEHHAEASPSRLGASIPPPPPFA 493
+P A+P ++ A PPPPP +
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMS 1713
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 7.5
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Frame = +2
Query: 236 RSPETHLALFADDTAIYYSCRKKALLHRRLQTAATT---MGQWFRKWRIDINPTKSTAVL 406
+ PET + D+ A + +K+ +T G R I P S +
Sbjct: 128 QKPETSSQIGKDNAAPVENVNEKSTSQETAPPVSTVPIQFGSITRNAAIPSKPKVSGNMQ 187
Query: 407 FKRGSPSEHHAEASPSRLGASIPP---PPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HS 577
K G S S + S PP P A+ S++ +GPR + ++ +T +
Sbjct: 188 NKSGVSSYSSKSQSVNSSVTSNPPHTEEPVAAKPEASSTATKGPRPTTSASNTNTSPANG 247
Query: 578 APTSR 592
APT++
Sbjct: 248 APTNK 252
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 428 EHHAEASPSRLGASIPPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIV 607
E + P + P Q ST+P R R S++ ++ ++V +AP + A++
Sbjct: 184 ERQLKQLPDAEQPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVL 243
Query: 608 P 610
P
Sbjct: 244 P 244
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 361 PEPLSHGGSRGLKSSMKQRLLPTRVVDG 278
P P H G R R LPT V+DG
Sbjct: 311 PSPTRHVGCRTFFMVTVSRFLPTCVIDG 338
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 9.9
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 144 AFPAPSRHSRSPARLRSLPXYYLVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 320
+ P PS S + L + S+ + R+P RS P+TP TR ++
Sbjct: 75 SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133
Query: 321 DFRPRLPPWDSGSGS 365
DF P P++ S
Sbjct: 134 DFTPPSSPFEDMQAS 148
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 291 RVGRRRCFIDDFRPRLPPWDSGSGS--GASTLTPRKAQRCSSKGGRPPNTTL 440
+ RR I P W G S G S +PR ++ S+G PP TL
Sbjct: 863 KAAARRANIGASSPSPGAWRRGGASAGGVSRDSPRYSRGGYSRGSVPPRETL 914
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,827
Number of Sequences: 5004
Number of extensions: 82190
Number of successful extensions: 279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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