Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_J04
         (830 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          77   8e-14
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.     70   9e-12
AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens ...    62   2e-09
X57147-1|CAA40437.1|  129|Homo sapiens endogenous retrovirus ERV...    35   0.42 

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 77.0 bits (181), Expect = 8e-14
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
 Frame = +2

Query: 35  PSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLK--KETPFNWENQQQISFDLLKQKL 208
           P + K ++ FLG   + R +IP+F+ +AKPL  + K     PF W +QQQ +F  LK+KL
Sbjct: 403 PKSRKQVRKFLGAAGFCRLWIPNFAVLAKPLYEVTKWGDREPFEWGSQQQQAFRELKEKL 462

Query: 209 TTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQGPVGKDRPIAFASRTLN 355
            +AP L  P+ ++PF L           VL+Q      RP+A+ S+ L+
Sbjct: 463 MSAPALGLPNLTKPFTLYVSEREKMAVRVLTQTVGPWPRPVAYLSKQLD 511


>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
          Length = 1819

 Score = 70.1 bits (164), Expect = 9e-12
 Identities = 36/106 (33%), Positives = 59/106 (55%)
 Frame = +2

Query: 35   PSNPKDIKSFLGLVSYYRRFIPDFSKIAKPLTSLLKKETPFNWENQQQISFDLLKQKLTT 214
            PSN   +  F+G +  +R  IPD+  +  PL SLLK++  + W+ + + +F  LK+ L +
Sbjct: 1009 PSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSLLKQKPDWQWDQEHEEAFLALKRALVS 1068

Query: 215  APVLAYPDFSQPFLLTCDASNHAVGSVLSQGPVGKDRPIAFASRTL 352
            A  L  P+   PF L    S+ A+ ++L Q   G+  PIA+ S+ L
Sbjct: 1069 ALCLMAPNSQLPFRLEVTVSHVALTAILHQEHSGRKHPIAYTSKPL 1114


>AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45009 fis, clone BRAWH3012779. ).
          Length = 179

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
 Frame = +2

Query: 71  LVSYYRRFIPDFSKIAKPLTSLLKKET--PFNWENQQQISFDLLKQKLTTAPVLAYPDFS 244
           ++ Y+  +IP F+ + KPL  L K     P N ++    SF  LK  L TAP LA PD S
Sbjct: 1   MIGYFHLWIPGFAILTKPLYKLTKGNLADPINPKSFPHSSFHSLKIALETAPTLALPDSS 60

Query: 245 QPFLL-TCDASNHAVGSVLSQGPVGKDRPIAFASRTLN 355
           QPF L T      AVG +L+QGP     PIAF S+ L+
Sbjct: 61  QPFSLHTAKVQGCAVG-ILTQGP--GPCPIAFLSKQLD 95


>X57147-1|CAA40437.1|  129|Homo sapiens endogenous retrovirus ERV9
           protein.
          Length = 129

 Score = 34.7 bits (76), Expect = 0.42
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +2

Query: 161 WENQQQISFDLLKQKLTTAPVLAYPDFSQPFLLTCDASNHAVGSVLSQGPVGKDRPIAFA 340
           WE + + +F  LKQ L  AP L+ P      L   + +  A+G VL+Q      +P+A+ 
Sbjct: 27  WEPEAETTFKTLKQALVQAPALSLPTGQNFSLYVRERARIALG-VLTQTHGTTPQPVAYL 85

Query: 341 SRTLN 355
           S+ ++
Sbjct: 86  SKEID 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,029,994
Number of Sequences: 237096
Number of extensions: 2434551
Number of successful extensions: 19650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19648
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)