Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_J02
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.14 
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    29   5.2  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.8  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   6.8  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   9.0  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 370 HQPSAAAPLPCVPTQSFVDPIHLKICXYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 206
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 452 PXEERSPRRWLXPRLTVPRQ--ASTSVPRTPAKCCSPTPLRS-NSVVCRSNSFEDLPVFA 282
           P +ERSP R   P  + PR+  AS S  ++ +   SP+P+R  N  +C     +   V+ 
Sbjct: 252 PVKERSPSRSPPPATSPPREKSASKSPVKSRSLSRSPSPVRDINQKLCIFRLQQQRHVWD 311

Query: 281 RWTRTHEC*HVSN 243
                + C H  N
Sbjct: 312 HDHPPYRCRHEDN 324


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 268 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 384
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 452 PXEERSPRRWLXPRLTVPRQASTSVPRTPAKCCSPTPLRSNS 327
           P + RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 223 PRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 274 VHRANTGRSSNELDRQTTELERRGVG 351
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,571,336
Number of Sequences: 37544
Number of extensions: 401909
Number of successful extensions: 1577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)