Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_J02
(914 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 6e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 6e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 6e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 1e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 41 1e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 40 2e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 4e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 6e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.10
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.1
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.8
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 8.9
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 42.3 bits (95), Expect = 6e-06
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Frame = +2
Query: 170 STRSSQRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW 349
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 350 GCSTWL-VSSERLWRPDVVLLNAX-------------ATTGGD--YAPPAARVSTXRLPG 481
G L ++ +LW+PD+++ N+ T G Y PP ST ++
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDI 183
Query: 482 SWXPAXXQ 505
+W P Q
Sbjct: 184 TWFPFDDQ 191
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 42.3 bits (95), Expect = 6e-06
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Frame = +2
Query: 170 STRSSQRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW 349
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 350 GCSTWL-VSSERLWRPDVVLLNAX-------------ATTGGD--YAPPAARVSTXRLPG 481
G L ++ +LW+PD+++ N+ T G Y PP ST ++
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDI 183
Query: 482 SWXPAXXQ 505
+W P Q
Sbjct: 184 TWFPFDDQ 191
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.3 bits (95), Expect = 6e-06
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 257 NIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAXATTGG 433
N++ T + ++ W D +L WN E+G L V SE +W PD+VL N G
Sbjct: 74 NLKNQVMTTNVW--VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYN---NADG 128
Query: 434 DYAPPAARVSTXRLPG--SWXP 493
+Y +T + G SW P
Sbjct: 129 NYEVTLMTKATLKYTGDVSWKP 150
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCST 361
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 362 WLVSSERLWRPDVVLLNAXATTGGD----------------YAPPAARVSTXRLPGSWXP 493
++ +LW+PD+++ N+ A G D Y PP ST ++ +W P
Sbjct: 61 LRITPNKLWKPDILMYNS-ADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFP 119
Query: 494 AXXQ 505
Q
Sbjct: 120 FDDQ 123
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCST 361
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 362 WLVSSERLWRPDVVLLNA-------------XATTGGD--YAPPAARVSTXRLPGSWXPA 496
++ +LW+PD+++ N+ T G Y PP ST ++ +W P
Sbjct: 61 LRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPF 120
Query: 497 XXQ 505
Q
Sbjct: 121 DDQ 123
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTW 364
+R + ++ +TL + ++ E + A L++ W+D L WN E+G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 365 L-VSSERLWRPDVVLLNAX-------------ATTGGD--YAPPAARVSTXRLPGSWXPA 496
L ++ +LW+PD+++ N+ T G Y PP ST ++ +W P
Sbjct: 61 LRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPF 120
Query: 497 XXQ 505
Q
Sbjct: 121 DDQ 123
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTW 364
+R + ++ +TL + ++ E + A L++ W+D L WN E+G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 365 L-VSSERLWRPDVVLLNAX-------------ATTGGD--YAPPAARVSTXRLPGSWXPA 496
L ++ +LW+PD+++ N+ T G Y PP ST ++ +W P
Sbjct: 61 LRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPF 120
Query: 497 XXQ 505
Q
Sbjct: 121 DDQ 123
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCST 361
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 362 WLVSSERLWRPDVVLLNA 415
++ +LW+PD+++ N+
Sbjct: 61 LRITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTW 364
+R + ++ +TL + ++ E + A L++ W+D L WN E+G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 365 L-VSSERLWRPDVVLLNAX-------------ATTGGD--YAPPAARVSTXRLPGSWXPA 496
L ++ +LW+PD+++ N+ T G Y PP ST ++ +W P
Sbjct: 61 LRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPF 120
Query: 497 XXQ 505
Q
Sbjct: 121 DDQ 123
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 41.1 bits (92), Expect = 1e-05
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Frame = +2
Query: 218 KIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRP 394
KI + L+ L N++ T + ++ +W D +L W+ E+G L V S+ +WRP
Sbjct: 53 KIKLKLS-QLIDVNLKNQIMTTNLW--VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRP 109
Query: 395 DVVLLNAXATTGGDYAPPAARVSTXRLPG--SWXP 493
D+VL N G++ A +T G W P
Sbjct: 110 DIVLYN---NADGNFEVTLATKATLNYTGRVEWKP 141
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.3 bits (90), Expect = 2e-05
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 221 IVVNLTLHLRHA---NIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 388
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 389 RPDVVLLN 412
PD+VL N
Sbjct: 104 LPDIVLYN 111
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.9 bits (89), Expect = 3e-05
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 203 PPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSE 379
P + ++ L ++H N+ E TV L++ W L+W + E+ ++ V S
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSY 113
Query: 380 RLWRPDVVLLNAXATTGGDYAPPA 451
+W PD+V +++ + G D P+
Sbjct: 114 EIWVPDIV-MHSVTSVGIDLEMPS 136
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 218 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 391
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 392 PDVVLLN 412
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 218 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 391
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 392 PDVVLLN 412
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.5 bits (88), Expect = 4e-05
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 188 RTIGTPPPDSKIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWG-CST 361
R +G + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 362 WLVSSERLWRPDVVLLN 412
V SE +W PD+VL N
Sbjct: 95 LHVPSEHIWLPDIVLYN 111
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 6e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 221 IVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 397
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 398 VVLLN 412
+L N
Sbjct: 92 TILYN 96
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.3 bits (85), Expect = 1e-04
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 218 KIVVNLTL-HLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 391
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 392 PDVVLLN 412
PD+VL N
Sbjct: 111 PDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.9 bits (84), Expect = 1e-04
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +2
Query: 185 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTW 364
+R +G + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 365 L-VSSERLWRPDVVLLNAXATTGGDYAPP 448
L + RLW+PDV++ N+ A G D P
Sbjct: 98 LRIPPHRLWKPDVLMYNS-ADEGFDGTYP 125
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.003
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 260 IRESESTVRIXADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 412
I E + T + + +W+D+RL++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 33.5 bits (73), Expect = 0.003
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 203 PPPDSKIVVNLTLHL--RHANIRESESTVRIXADLQMNWIDKRLSWNAGEW-GCSTWLVS 373
P +I N+T+ L + + S + + + + + W D LSW ++ G + V
Sbjct: 61 PISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVK 120
Query: 374 SERLWRPDVVLLNAXATT 427
S+ +W PD+ + N+ T
Sbjct: 121 SDDIWVPDISVYNSGDMT 138
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.3 bits (60), Expect = 0.10
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 302 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 412
+ +W D RLS+ S + ER+WRPD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 364 PSAAAPLPCVPTQS 323
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 6.8
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 221 IVVNLTLHLRHAN-IRESESTVRIXADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 382
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 383 LWRPDVVLLNA 415
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 8.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 162 GQ*CCVFAFCRTSYSTSEEKXVTR 91
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,156
Number of Sequences: 438
Number of extensions: 3498
Number of successful extensions: 63
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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