Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_J01
(815 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 34 0.71
AK074102-1|BAB84928.1| 1269|Homo sapiens FLJ00173 protein protein. 31 3.8
K03205-1|AAA60186.1| 198|Homo sapiens PRB1 protein. 31 5.0
BC141917-1|AAI41918.1| 198|Homo sapiens PRB1 protein protein. 31 5.0
AK027396-1|BAB55082.1| 171|Homo sapiens protein ( Homo sapiens ... 31 6.6
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 30 8.7
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 30 8.7
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 30 8.7
X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor ga... 30 8.7
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 30 8.7
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 30 8.7
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 30 8.7
BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein. 30 8.7
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 30 8.7
BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein. 30 8.7
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 30 8.7
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 30 8.7
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 30 8.7
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 30 8.7
AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein. 30 8.7
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 30 8.7
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 33.9 bits (74), Expect = 0.71
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---R 238
P LL +A + ++ L+ YD + P + VVN++L L N+
Sbjct: 7 PLLLLLLLAVCLGAQGRNQEERLLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLN 66
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E E + ++M W D RL W+
Sbjct: 67 EREEALTTNVWIEMQWCDYRLRWD 90
>AK074102-1|BAB84928.1| 1269|Homo sapiens FLJ00173 protein protein.
Length = 1269
Score = 31.5 bits (68), Expect = 3.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -3
Query: 453 GDGPVXRYTGRGEXSPRRWXQPGXAVP----RQASTSVPRTPAKXCSPTPPAFQ 304
G GP + GRG + PG AVP R+ + PR P + C P P +
Sbjct: 1155 GAGPHLQPPGRGLPAAPALLFPGAAVPGRRPRRRAAGHPRRPGRPCGPRAPGLR 1208
>K03205-1|AAA60186.1| 198|Homo sapiens PRB1 protein.
Length = 198
Score = 31.1 bits (67), Expect = 5.0
Identities = 24/86 (27%), Positives = 27/86 (31%)
Frame = +3
Query: 549 GXPXPXHXGXPXRPXPXXLSXARXXGXPRPGSXGAXNPXXXPXXXAXSAXXXGPXGXXRS 728
G P P G P P P + G P PG P P S P G +
Sbjct: 49 GPPPPP--GKPQGPPPQ--GGNKPQGPPPPGK-----PQGPPPQGDKSRSPRSPPGKPQG 99
Query: 729 PPPXGXXVRXXPXDXXXXXXXPXPXG 806
PPP G + P P P G
Sbjct: 100 PPPQGGKPQGPPPQGGNKPQGPPPPG 125
>BC141917-1|AAI41918.1| 198|Homo sapiens PRB1 protein protein.
Length = 198
Score = 31.1 bits (67), Expect = 5.0
Identities = 24/86 (27%), Positives = 27/86 (31%)
Frame = +3
Query: 549 GXPXPXHXGXPXRPXPXXLSXARXXGXPRPGSXGAXNPXXXPXXXAXSAXXXGPXGXXRS 728
G P P G P P P + G P PG P P S P G +
Sbjct: 49 GPPPPP--GKPQGPPPQ--GGNKPQGPPPPGK-----PQGPPPQGDKSRSPRSPPGKPQG 99
Query: 729 PPPXGXXVRXXPXDXXXXXXXPXPXG 806
PPP G + P P P G
Sbjct: 100 PPPQGGKPQGPPPQGGNKPQGPLPPG 125
>AK027396-1|BAB55082.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ14490 fis, clone MAMMA1002886. ).
Length = 171
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 321 WGCXTWLVSSERLWRPDVVLLXPAATTXGDYXLRAPC 431
WGC E+LW P P +T G+ APC
Sbjct: 78 WGCPGTGGDGEKLWAPSPPFAHPHSTLCGEALPAAPC 114
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 30.3 bits (65), Expect = 8.7
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 238
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 30.3 bits (65), Expect = 8.7
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 238
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor gamma
chain precursor protein.
Length = 520
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 304
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 32 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 91
Query: 305 WN 310
W+
Sbjct: 92 WD 93
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 30.3 bits (65), Expect = 8.7
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 238
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 30.3 bits (65), Expect = 8.7
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 238
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 30.3 bits (65), Expect = 8.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 56 LILFWLPFLLTCAIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLH 217
L+LF+L A+ C A + ++D LL Y+ R + S+++ + L L
Sbjct: 7 LVLFFL-----VALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLS 61
Query: 218 LRHA-NIRESESTVRIQADLQMNWIDKRLSWNA 313
L ++ E E + L+ W D RL+WN+
Sbjct: 62 LAQLISVNEREQIMTTNVWLKQEWTDYRLTWNS 94
>AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 304
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 32 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 91
Query: 305 WN 310
W+
Sbjct: 92 WD 93
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 30.3 bits (65), Expect = 8.7
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 238
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E V L+ W+D L WN
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWN 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,961,848
Number of Sequences: 237096
Number of extensions: 2414902
Number of successful extensions: 6810
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6717
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -