Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_J01
(815 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.007
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 29 0.051
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 1.1
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 1.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 1.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 4.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 7.8
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNA 313
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.007
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSW 307
+D+RL++
Sbjct: 62 VDRRLAF 68
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.1 bits (62), Expect = 0.051
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +2
Query: 59 ILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP------DSKIVVNLTLHL 220
+L L FLL + + + ++D++L YD P D +V + L +
Sbjct: 8 LLVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATDGPAIVRVNLFV 67
Query: 221 RH-ANIRESESTVRIQADLQMNWIDKRLSWN 310
R A I + + +Q + W+D+RL +N
Sbjct: 68 RSIATISDIKMEYSVQLTFREQWLDERLRFN 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWN 310
++ E + A L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 342 VSSERLWRPDVVL 380
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 321 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 229
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 342 VSSERLWRPDVVL 380
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 321 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 229
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 342 VSSERLWRPDVVL 380
V S+ +WRPD+VL
Sbjct: 101 VPSDHIWRPDIVL 113
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 324 GCXTWLVSSERLWRPDVVL 380
G T V SE +W PD+VL
Sbjct: 91 GVDTLHVPSEHIWLPDIVL 109
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 318 EWGCXTWL-VSSERLWRPDVVL 380
E+G T L V SE +W PD+VL
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVL 109
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 3.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 342 VSSERLWRPDVVL 380
V SE +W PD+VL
Sbjct: 110 VPSENIWLPDIVL 122
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 4.5
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWN 310
K+ VN L ++ N+ E ++ L+ W D +L W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWD 91
Score = 22.6 bits (46), Expect = 4.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 351 ERLWRPDVVLLXPAATTXGDYXLR 422
+++W+PD+VL A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/34 (29%), Positives = 12/34 (35%)
Frame = +3
Query: 642 SXGAXNPXXXPXXXAXSAXXXGPXGXXRSPPPXG 743
S GA P P + P + PPP G
Sbjct: 17 SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 342 VSSERLWRPDVVLLXPA 392
+ RLW+PDV++ A
Sbjct: 100 IPPHRLWKPDVLMYNSA 116
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,243
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 37
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -