Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_I24
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1041 - 8174344-8174574 29 3.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.6
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 3.6
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 29 4.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.3
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.3
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
>06_01_1041 - 8174344-8174574
Length = 76
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 318 WLVSSE-RLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCXKALGH*HSNFYAG*TIGP 494
WL S E R WR +V AAA A LR R + G SC + G G +GP
Sbjct: 17 WLPSLEQRRWRRRLVREAAAAAVA----LRTRSGDGGDGSCVRRDGRERGWMGMGVVVGP 72
Query: 495 T 497
T
Sbjct: 73 T 73
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 410 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 261
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 738 TRGXGXAPXRGPXAXSNXPXXPXPRXXPPXPGNARXPXXQXXSHPRXPTRT 586
T G AP P P P PR PP P P + S R T T
Sbjct: 350 TFGQPPAPPPPPPFAPTLPPPPPPRRKPPSPSPPSSPLIENTSALRSTTTT 400
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 58 FLLTCAIASAAECENATSLSLMIDSLLATYDRESPPVLQNRSQPD 192
+LL A A + SL +DSL +++PPV Q + +P+
Sbjct: 414 YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.8
Identities = 24/83 (28%), Positives = 24/83 (28%)
Frame = -3
Query: 857 AXGTPPXXXKXXXXXGXGSXXKKXPPXXXPRDPXREXXPXPGAXGPPXXGGRGPXRTXLX 678
A PP G GS PP P P P PG PP G G
Sbjct: 329 AAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPR---PPGPGPGPPPPPGAAGRGGGGPP 385
Query: 677 XPAQGXXXXTPXTXGTPXXKXXP 609
PA P G P K P
Sbjct: 386 PPA---LPGGPRARGPPPFKKSP 405
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 223 VRVHRADTGRSSNELDRQTTELERRG 300
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 399 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 259
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 347 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 261
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 408 GRGERSPRRWLQPRLAVPRQASTSVPRTP 322
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,999,905
Number of Sequences: 37544
Number of extensions: 478169
Number of successful extensions: 1622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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