Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_I24
(862 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 30 0.024
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.055
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.055
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.073
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.17
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.22
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.39
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 25 0.90
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.90
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 4.8
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 6.3
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 30.3 bits (65), Expect = 0.024
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
+ RLW+PDV++ N+A G Y V NNG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.055
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.055
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.073
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 306 GCSTWLVSSERLWRPDVVLLNAA 374
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.17
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA 374
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.17
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA 374
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.17
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA 374
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.22
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 300 EWGCSTWL-VSSERLWRPDVVLLNAA 374
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 428
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.39
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 306 GCSTWLVSSERLWRPDVVLLNAA 374
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 25.0 bits (52), Expect = 0.90
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 194 LHLRHANIRESESTVRILADLQMNWIDKRLSWNA 295
L ++H N+ E TV L++ W L+W +
Sbjct: 66 LSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.90
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALR 404
+++W+PD+VL N A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNA---GGMGLQHL 319
N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA 374
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -3
Query: 806 GSXXKKXPPXXXPRDPXREXXPXPGAXGPPXXGGRG 699
G+ + P P+ P R P P GPP G G
Sbjct: 19 GAPGPQPSPHQSPQAPQRGSPPNPS-QGPPPGGPPG 53
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 4.8
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 VVNPTLHLRH-ANIRESESTVRILADLQMNWIDKRLSWNAGGMGLQHL 319
+V L +R A I + + + + W+D+RL +N G L++L
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYL 107
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 333 ERLWRPDVVLLN 368
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 6.3
Identities = 6/27 (22%), Positives = 15/27 (55%)
Frame = -3
Query: 527 NRT*TCKSACRWXNXLTCIEIGVLMSK 447
N+T TC W +C+++ ++ ++
Sbjct: 241 NQTITCPIKVSWRGNYSCLKVDLIFTR 267
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 6.3
Identities = 6/27 (22%), Positives = 15/27 (55%)
Frame = -3
Query: 527 NRT*TCKSACRWXNXLTCIEIGVLMSK 447
N+T TC W +C+++ ++ ++
Sbjct: 292 NQTITCPIKVSWRGNYSCLKVDLIFTR 318
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.2 bits (45), Expect = 6.3
Identities = 6/27 (22%), Positives = 15/27 (55%)
Frame = -3
Query: 527 NRT*TCKSACRWXNXLTCIEIGVLMSK 447
N+T TC W +C+++ ++ ++
Sbjct: 241 NQTITCPIKVSWRGNYSCLKVDLIFTR 267
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 6.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 215 IRESESTVRILADLQMNWIDKRLSWNAG 298
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,217
Number of Sequences: 438
Number of extensions: 4804
Number of successful extensions: 48
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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