Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I23
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   134   1e-32
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   134   2e-32
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.7  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   7.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  134 bits (324), Expect = 1e-32
 Identities = 58/75 (77%), Positives = 70/75 (93%)
 Frame = +3

Query: 9   IGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 188
           +GYKAGMTH+VR+ DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVW
Sbjct: 47  LGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVW 106

Query: 189 AEHMSEDCRRRFYKN 233
           AEH+SE+ +RRFYKN
Sbjct: 107 AEHLSEEVKRRFYKN 121



 Score =  100 bits (240), Expect = 2e-22
 Identities = 44/83 (53%), Positives = 65/83 (78%)
 Frame = +3

Query: 375 YKCKKKAFTEASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 554
           +K KKKAFT+ +KK+ +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 555 IQLNGGTIEDKVKWAREHLEKPI 623
           IQ+NGG++ DKV+WAREH EK +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTV 203


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  134 bits (323), Expect = 2e-32
 Identities = 57/75 (76%), Positives = 70/75 (93%)
 Frame = +3

Query: 9   IGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 188
           +GYKAGMTH+VR+ DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVW
Sbjct: 47  LGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVW 106

Query: 189 AEHMSEDCRRRFYKN 233
           AEH+SE+ +RRFYKN
Sbjct: 107 AEHLSEEVKRRFYKN 121



 Score =  100 bits (240), Expect = 2e-22
 Identities = 44/83 (53%), Positives = 65/83 (78%)
 Frame = +3

Query: 375 YKCKKKAFTEASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 554
           +K KKKAFT+ +KK+ +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 555 IQLNGGTIEDKVKWAREHLEKPI 623
           IQ+NGG++ DKV+WAREH EK +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTV 203


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 336 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 199
           P++ +   ++LGNY+  +T+   ++ A  F  E  +C+  +  + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 477 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 587
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 305 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 180
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,554
Number of Sequences: 5004
Number of extensions: 66026
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)