Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I18
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.007
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.27 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.63 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.5  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.9  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = -3

Query: 844 PPPPXXXRXPGGAXPPXGXPXAGXPPXGAXPPPPXKGXXGXGSPXXXFGPXA 689
           PPPP     P  A  P   P       G  PPPP  G  G G P     P A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 32.7 bits (71), Expect = 0.068
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = -3

Query: 844 PPPPXXXRXPGGAXPPXGXPXAGXPPXGAXPPPPXKGXXGXGSPXXXFGPXA 689
           PPP      P    PP G   AG PP    PPPP       GS      P A
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPPAVSAGGSRYYAPAPQA 799


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 342
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 844  PPPPXXXRXPGGAXP-PXGXPXAGXPPXGAXPPP 746
            PPPP     P  A P P G P A  PP  A   P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = -3

Query: 817  PGGAXPPXGXPXAGXPPXGAXPPPPXKGXXGXGSPXXXFGPXAXXGVTPXXGXGXXTAL 641
            P  A PP        PP  + PPPP       G P     P            G  +AL
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSAL 1752



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 844  PPPPXXXRXPGGAXPPXGXPXAGXPPXGAXPPP 746
            PPPP     P    PP   P    PP  A PPP
Sbjct: 1707 PPPPPMSVPP----PPSAPPMPAGPP-SAPPPP 1734


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 844  PPPPXXXRXPGGAXPPXGXPXAGXPPXGAXPP 749
            PPPP     P  A PP   P +  PP G  PP
Sbjct: 1882 PPPPPPMALPK-AGPPSAAPTSALPPAG--PP 1910


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 817 PGGAXPPXGXPXAGXPPXGAXPPPP 743
           P G  PP   P    PP    PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 817 PGGAXPPXGXPXAGXPPXGAXPPPPXKG 734
           PG   PP   P  G  P    PPPP  G
Sbjct: 6   PGNPPPPP--PPPGFEPPSQPPPPPPPG 31


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -3

Query: 838 PPXXXRXPGGAXPPXGXPXAGXPPXGAXPPP 746
           PP   + P  A P    P    PP    PPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +3

Query: 717 DPXPXXPXXGGGGXAPXGGXPAXGXPXGGXAPPGXLXXXGGG 842
           DP         GG  P GG P  G P G     G     GGG
Sbjct: 427 DPFDILRAYQAGGSFPGGGFPGGGFPGGSYNSQG--FGMGGG 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,899
Number of Sequences: 5004
Number of extensions: 59981
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)