Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I17
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   6.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   8.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   8.7  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   8.7  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 274 SEIRDSTLTGGDVFEHVPKYSKKKHYADQNTSSGTPQE 387
           S I  + L     F   PK+S+K    D N+++ +P E
Sbjct: 145 SSINSAKLRASRSFFRFPKWSRKSWNPDVNSTTSSPSE 182


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 337  KKKHYADQNTSSGTPQERECSIRKSCNNV 423
            K+K Y  Q   SG   +   SIRK+C N+
Sbjct: 1717 KQKEYVTQLILSGLLNKNTNSIRKTCMNI 1745


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +2

Query: 287 TLLSLAVTCLNMFRSTAKKSIMQIRILVVVRHKNVNAAY---VSRVITSPGYLDGRSESR 457
           +LLSL     +  RST+  S  Q+     +    ++ +     S ++T+ G +       
Sbjct: 338 SLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVISPSVSSPTSSILTNSGSIKSGDHQI 397

Query: 458 RNPSHLYVLAHGCPVLTVDVITWRLLTGNTTT 553
              S +    HG  V T+  +T    T  TTT
Sbjct: 398 VTTSFVQTTTHGSQVETLTYVTTLTETILTTT 429


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 612 SKVSLGDLHFALNFFAIACYVVVFPVSKRHVMTSTVKT 499
           S V L     A+  F  AC + +F  +KR+++   +KT
Sbjct: 377 SLVQLEHRILAITTFVAACGLFIFSRAKRNILPKKIKT 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,043
Number of Sequences: 5004
Number of extensions: 67697
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)