Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_I15
(924 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.057
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.075
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 5.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.6
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 762 PPXPXXXXGXXPPPXXPXXXPGRPXXRVPXPPXPXXXXRPPXPXP 896
PP P G P P P P P V PP P PP P P
Sbjct: 1179 PPVPKPAAGVPPVPP-PSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 762 PPXPXXXXGXXPPPXXPXXXPGRPXXRVPXPPXPXXXXRPPXPXP 896
PP P P P P P P V PP P PP P P
Sbjct: 1102 PPVPKPSVAVPPVPA-PSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 762 PPXPXXXXGXXPPPXXPXXXPGRPXXRVPXPPXPXXXXRPPXPXP 896
PP P P P P P P V PP P PP P P
Sbjct: 1121 PPVPKPSVAAPPVPV-PSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 30.3 bits (65), Expect = 0.40
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 762 PPXPXXXXGXXPPPXXPXXXPGRPXXRVPXPPXPXXXXRPPXPXP 896
PP P G P P P P V PP P PP P P
Sbjct: 1083 PPVPAPS-GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Frame = +2
Query: 737 PVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPP-----XXPXPXXAPXXAXPXP 901
PV P+ A PP P P P S P PP P AP A P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 902 PXXLXXP 922
+ P
Sbjct: 1163 KPSVAAP 1169
Score = 30.3 bits (65), Expect = 0.40
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +2
Query: 716 SPRGPRTPVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPPXXPXPXXAPXXAXP 895
+P PV PA PP P P P S PP PP P P P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS-----VGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 896 XPP 904
P
Sbjct: 1228 PVP 1230
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +3
Query: 762 PPXPXXXXGXXPPPXXPXXXPGRPXXRVPXPPXPXXXXRPPXPXP 896
PP P P P P P PP P PP P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +2
Query: 737 PVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPPXXPXPXXAPXXAXP 895
PV P+ A PP P P P S P PP AP P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +2
Query: 719 PRGPRTPVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPPXXPXP-XXAPXXAXP 895
P PV P+ PP P P P S P P P P AP + P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +2
Query: 728 PRTPVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPPXXPXPXXAPXXAXP 895
P P+ P P P R P P S P P P P AP P
Sbjct: 992 PSAPLSKPVSTSPAAPLA-RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIP 1046
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +2
Query: 737 PVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPPXXPXPXXAPXXAXPXPP 904
PV P+ A PP P P P S P P P P P PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG---VPPVPP 1193
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 719 PRGPRTPVXWPAXAXPPXPXTXRXAPXPXXSXXXTXTTXPPRXPPXXPXPXXAPXXAXPX 898
P P+ P+ A PP P P P S P P AP A P
Sbjct: 1027 PSADAPPIPVPSTA-PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Query: 899 P 901
P
Sbjct: 1086 P 1086
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.075
Identities = 35/145 (24%), Positives = 42/145 (28%), Gaps = 5/145 (3%)
Frame = +2
Query: 485 PPPPPXFFXXXXXXXXN--SGRXXXPPPXXXXXQHGAXXPXXXXXXXXXXXXXXXXXXXX 658
PPPPP N S PPP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 659 GXRXPXRXXXPIXSXXXXRSPRGPRTPVXW-PAXAXPPXPXTXRXAPXPXXSXXXTXTTX 835
G + P P+ S +P P + A A PP R + P + +
Sbjct: 373 GRQPP-----PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA 427
Query: 836 PPRXPPXXP--XPXXAPXXAXPXPP 904
PP PP P P AP A P PP
Sbjct: 428 PPSLPPSAPPSLPMGAP-AAPPLPP 451
Score = 28.7 bits (61), Expect = 1.2
Identities = 32/142 (22%), Positives = 34/142 (23%), Gaps = 5/142 (3%)
Frame = +3
Query: 486 PPPPPXFXXGXXXXXXTAAGXXXPPPXXXXXNTGPPXPPX----AAXXPWAXXXXXXXXX 653
PPPP G PPP +TG PP A P A
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 654 RXAXGXXXXXXXRSSPAXXAXXXXXXXXXXXXXXXXPPX-PXXXXGXXPPPXXPXXXPGR 830
A S+P PP P P P P
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 831 PXXRVPXPPXPXXXXRPPXPXP 896
P PP P PP P P
Sbjct: 460 PAGMPAAPPLPPAAPAPP-PAP 480
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +3
Query: 465 PPXGGXXPPPPPXFXXGXXXXXXTAAGXXXPPPXXXXXNTGPPXPPXA 608
PP G PPPPP + G PP + PP PP A
Sbjct: 354 PPQGRSAPPPPP-------PRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +3
Query: 795 PPPXXPXXXPGRPXXRVPXP-PXPXXXXRPPXPXPXLPGXS 914
PPP P P R P P PP P P +PG S
Sbjct: 361 PPPPPPRSAPST--GRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Score = 26.2 bits (55), Expect = 6.5
Identities = 28/143 (19%), Positives = 31/143 (21%)
Frame = +3
Query: 468 PXGGXXPPPPPXFXXGXXXXXXTAAGXXXPPPXXXXXNTGPPXPPXAAXXPWAXXXXXXX 647
P PP PP + PPP N PP + P A
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Query: 648 XXRXAXGXXXXXXXRSSPAXXAXXXXXXXXXXXXXXXXPPXPXXXXGXXPPPXXPXXXPG 827
+ R S A A P G P P
Sbjct: 284 INSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Query: 828 RPXXRVPXPPXPXXXXRPPXPXP 896
R P P PP P P
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +3
Query: 453 PXGAPPXGGXXPPPPPXFXXGXXXXXXTAAGXXXPPPXXXXXNTG 587
P AP GG PPPPP G AG PPP + G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG--------AGPPPPPPPPPAVSAG 788
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Frame = +3
Query: 762 PPXPXXXXGXXPPPXXPXXXPGRPXXRVPXPPXPXXXXR---PPXPXPXLPGXS 914
PP P P P P P P PP P PP P P P S
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/46 (28%), Positives = 13/46 (28%)
Frame = +3
Query: 465 PPXGGXXPPPPPXFXXGXXXXXXTAAGXXXPPPXXXXXNTGPPXPP 602
PP P P G PPP GPP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +3
Query: 795 PPPXXPXXXPGRPXXRVPXPPXPXXXXRPPXPXPXLPGXSXXP 923
PPP P VP P PP P P + G P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 540 PLXGGGGAGXXKXXGGGGGXXPRGG 466
P GGG G GG GG RGG
Sbjct: 443 PRTGGGSRGGRGGFGGRGGFGGRGG 467
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect(2) = 5.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 465 PPXGGXXPPPPPXF 506
PP PPPPP F
Sbjct: 5 PPGNPPPPPPPPGF 18
Score = 20.6 bits (41), Expect(2) = 5.5
Identities = 7/16 (43%), Positives = 8/16 (50%)
Frame = +3
Query: 555 PPPXXXXXNTGPPXPP 602
PPP + PP PP
Sbjct: 14 PPPGFEPPSQPPPPPP 29
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 791 APXPXXSXXXTXTTXPPRXPPXXPXPXXAPXXAXPXPPXXLXXP 922
AP S T+ PPR P P AP PP P
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 30 EHWLAYWGSLGIASIDQL 83
+HWL + S G AS+DQ+
Sbjct: 195 KHWLGVYQSFGKASVDQI 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,794
Number of Sequences: 5004
Number of extensions: 31693
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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