Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I13
         (1078 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.052
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.64 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   6.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.052
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +2

Query: 107 KXPPPPPPXXGAPXXGXXXFSPXXPPPXXGXGGXPPP 217
           K PPPPPP    P           PPP    GG PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPI--PVPPPAPIMGGPPPP 764



 Score = 29.9 bits (64), Expect = 0.64
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = +3

Query: 114 PPPPPXXXGPXXXXXXXFPXXXPPPXXGXGGPPPXXXFXXPPXXGPXGGGXK 269
           PPP P   GP        P   PPP     GPPP      PP      GG +
Sbjct: 752 PPPAPIMGGP--------PPPPPPPGVAGAGPPP----PPPPPPAVSAGGSR 791



 Score = 29.9 bits (64), Expect = 0.64
 Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +1

Query: 115 PPPPPXXXGPXXGXXXFFPXXPPPPXG-GXGXPPPXXFFXXPPXGXPXGG 261
           PPP P   GP        P  PPPP   G G PPP      PP     GG
Sbjct: 752 PPPAPIMGGP--------PPPPPPPGVAGAGPPPP----PPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 113 PPPPPPXXGAPXXGXXXFSPXXPPPXXGXGGXPPP 217
           P P P     P        P  PPP  G  G  PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 113  PPPPPPXXGAPXXGXXXFSPXXPPPXXGXGGXPPP 217
            PP P P  G P       +P  P P  G    PPP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 113  PPPPPPXXGAPXXGXXXFSPXXPPPXXGXGGXPPP 217
            PP P P  G P       +P  P P  G    P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
 Frame = +2

Query: 113 PPPPPPXXGA----PXXGXXXFSPXXPPP--XXGXGGXPPP 217
           PPPPPP   A    P       +P  PPP      G  PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
 Frame = +2

Query: 107 KXPPPPPP----XXGAPXXGXXXFSPXXPPP 187
           K PPPPPP      G P  G    +   PPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 213 GGXPPXPXXGGGXXGEKXXXPXXGAPXXGGGGGGXF 106
           GG PP P   GG  G        G     GGG G F
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = -3

Query: 314 GGGXFXXGGKKKXXXFXPPPXGXPXGGXXKXXXGGGXPXPPXGGGGXXGKXXXXPXXGPX 135
           GGG    GG        PPP     GG      G G      GG G  G        GP 
Sbjct: 187 GGGFGGFGGGSGG----PPPGPGGFGGFG----GFGGEGHHHGGHGGFGGGPGGFEGGPG 238

Query: 134 XXGGGGGXF 108
             GGG G F
Sbjct: 239 GFGGGPGGF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,244
Number of Sequences: 5004
Number of extensions: 44333
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)