Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I13
         (1078 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.66 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.66
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 416 QGNFGCPGISGGQPEKPEKPQTNQXPPPXFLXXPGG 309
           Q + G PG      + P+ PQ    P P     PGG
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 115 PPPPPXXXGPXXGXXXFFPXXPPPPXGGXGXPP 213
           P P      P  G     P   PPP G  G PP
Sbjct: 25  PSPHQSPQAPQRGSPPN-PSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 113 PPPPPPXXGAP 145
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -2

Query: 210 GXPPXPXXGGGXXGEKXXXPXXGAPXXGGGGG 115
           G P     GG   G        GA   GGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -1

Query: 208 GPPXPXXGGGXXXGKXXXXXXXGPXXXGGGGG 113
           G P     GG   G        G    GGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 113  PPPPPPXXG 139
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,053
Number of Sequences: 438
Number of extensions: 9670
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36029799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)