Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I12
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 601 PPPPXXPXGXGXGGXXPPPP 660
           PPPP  P G    G  PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 29.5 bits (63), Expect = 0.52
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 601 PPPPXXPXGXGXGGXXPPPP 660
           PPPP  P   G G   PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 600 PPPPXXXXXXGXGGXAXPPPP 662
           PPPP      G G    PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 601 PPPPXXPXGXGXGGXXPPPP 660
           PPPP    G G     PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 601 PPPPXXPXGXGXGGXXPPPP 660
           PPPP  P G       PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 601 PPPPXXPXGXGXGGXXPPPPXXXXKXXK 684
           PPPP  P         PPPP    K  K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,365
Number of Sequences: 5004
Number of extensions: 30704
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)