Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I03
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   7.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 242 VRVHRANTGRSSNELDRQTTELERR 316
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 5   GFTRDSFNRSVVIKCRRLILFXLPVSPHLCYS 100
           GF RD FN    I C  L+ F   +  + C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 18  IASIDQLS*NVDDLYYSXYRFLLTCAIASAAECENATSL 134
           +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 83  VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/55 (23%), Positives = 17/55 (30%)
 Frame = +1

Query: 634 LXHGNRXXSPXXXXPPXXPXXXXGXXPXXXXPXMXXXXXXGPXPPXRGXXXPPFP 798
           L + +R  +P    PP  P       P    P +       P  P      PP P
Sbjct: 406 LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 489 RNWSANVQALYPGDGAVIRYTGXESVVPRRWLQ 391
           RNW   +Q L P D   +RY   +S + + WLQ
Sbjct: 158 RNW---IQHLAPFDYLPVRYANVQSNLIKYWLQ 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,688
Number of Sequences: 5004
Number of extensions: 45411
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)