Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_I01
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.80 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.3  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 237 VRVHRANTGRSSNELDRQTTELERR 311
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 20/72 (27%), Positives = 20/72 (27%)
 Frame = +3

Query: 549 PXPXPXXXXPXXXXXXXPGXXSXXPXPGXGGXPPXGPPXXGXGGARXPXXPXXXAXXAXX 728
           P P P    P       P      P P  GG PP  PP    G    P  P   A  A  
Sbjct: 733 PPPPPAVIVPTPAPAPIP---VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 729 XXXXCXXPPPXP 764
                  P   P
Sbjct: 790 SRYYAPAPQAEP 801



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
 Frame = +3

Query: 504 PXPLPTRXFPXXAXXPXPXPXXXXPXXXXXXXPGXXSXXPXPGXGG----XPPXGPPXXG 671
           P P P    P  A  P P P    P       P      P PG  G     PP  PP   
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPA-PIMGGPPPP-----PPPPGVAGAGPPPPPPPPPAVS 786

Query: 672 XGGAR 686
            GG+R
Sbjct: 787 AGGSR 791


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
 Frame = +1

Query: 646 PPXGPXXXXXXGPXXXXXPXGXPXPPXXXXXXVXXPP-PXXXPXPPPA 786
           PP  P       P     P   P  P         PP P   P PPPA
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
 Frame = +3

Query: 495  TIGPXPLPTRXFPXX---AXXPXPXPXXXXPXXXXXXXPGXXSXXPXPGXGGXPPXGPP 662
            T  P P+PT   P     +  P   P    P       P      P P   G PP   P
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 240 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 133
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,755
Number of Sequences: 5004
Number of extensions: 43509
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)